Frankliniella occidentalis (western flower thrips): 113207218
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Entry
113207218 CDS
T07591
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113207218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113207218
03019 Messenger RNA biogenesis [BR:
foc03019
]
113207218
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113207218
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113207218
U7-dependent histone pre-mRNA processing factors
113207218
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
113207218
NCBI-ProteinID:
XP_026279461
UniProt:
A0A6J1SLQ0
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MTSKRKPESQVPAEESDLLQVRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL
PFVDLIEADEIDLLLISHFHLDHSGALPWFLMKTSFKGRCFMTHATKAIYRWLLSDYIKV
SNIATEQMLYTEADLEASMDKIEVLNFHEEKDVMGIKFWAYNAGHVLGAAMFMLEIAGVK
ILYTGDFSRQEDRHLMAAEIPNVHPDVLITESTYGTHIHEKREEREGRFTSLVHDIVNRG
GRCLIPVFALGRAQELLLILDEYWSQHPELHDIPIYYASSLAKKCMAVYQTYINAMNDKI
RRQIAIKNPFVFQHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDSKNGVI
IAGYCVEGTLAKTILSEPEEITTMTGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VVLVHGEQNEMSRLKAALQREYEDDPNTKMEIHNPRNTVAVELYFRGEKTAKVMGTLAVE
EPKPGKKLSGVLVKRNFNYHMLSPADVQKYTDMRMSTVTQRQSIHYSGSVPLLKHLLAQI
AGTVEPIDEHKVRVFNCIDVNVENKIVTMEWSATPVNDMYADSVLTAILQAENLDSSQKI
YPTATKMDRMHFKECLIEMLQDMFGEDSVPKIFKGEKLYVSVDGKKANIDLVNLEVICED
DDTFQQIIQTAVTKLHQSLAPPHM
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgaagagaaaacccgaatcccaagtaccggcagaagaaagtgatcttcttcaa
gttcggccgcttggagctggccaggaagtcggtagatcatgcataatgctcgagttcaag
ggcaagaaaataatgttagattgtggaatacatcctggattatcagggatggatgctctt
ccttttgttgatttaattgaagcagatgaaatagatttactacttatctcacactttcat
ttggaccacagtggtgccctgccgtggtttctcatgaagaccagttttaaagggagatgt
tttatgactcatgccactaaagccatttaccgctggctcctttcagactacataaaagtt
agcaatattgctactgagcagatgttgtatactgaagcagatctggaagcaagtatggac
aaaattgaggttttgaatttccatgaagaaaaggatgttatgggaataaaattctgggcc
tataatgcaggtcatgttctcggagctgctatgttcatgttagaaattgctggtgtgaag
atactgtacacaggagacttttctcgtcaagaggatagacatttgatggctgcagaaatt
cctaatgtccatcctgatgtcctaataactgaatccacttatggaacccacatccatgaa
aaaagggaagaaagagaaggaagattcacatcacttgttcacgacattgttaatagaggg
ggtcgctgtttgatacctgtttttgctcttggaagagctcaagaacttttgttaatttta
gatgagtattggagtcagcatccagagctgcatgacataccaatttactacgcttcctca
ttggcaaaaaaatgcatggctgtgtatcagacatacataaatgctatgaatgataaaatt
cgtcgacaaatagcgatcaaaaatccgtttgtattccagcatatatccaatcttaagggt
attgaccattttgaggacattggtccttgtgttgtaatggcctctcctggtatgatgcag
agtggattgtcacgtgagctctttgagtcatggtgcacagacagtaagaatggagttatc
attgcgggttattgtgttgaaggaacattagctaagacgatcctgtctgaacctgaagaa
ataactactatgactggccagaagttacctcttaaaatgtctgtagattatatatcattc
tcagctcacactgactaccaacagacaagtgagttcatcagagcattaaaacctcctcat
gtggttttagttcatggtgaacagaatgaaatgagtcgtttgaaggctgccttacagcgt
gaatatgaggatgacccaaacactaaaatggaaattcacaaccccagaaatacagtagct
gtagagctgtattttagaggagagaaaacagcaaaggttatgggtactcttgcagtagaa
gagccaaaaccaggaaaaaaactgtctggtgtgctagttaagagaaatttcaactatcat
atgttatctcctgctgatgttcaaaaatatacagacatgagaatgagtacagtcacacag
agacaatctatacattattcaggatctgttcctcttcttaagcatctgttggcacaaatt
gcaggaactgtagaaccaattgatgaacataaggttcgagtgtttaattgtattgatgta
aatgtagagaataaaatcgtgactatggagtggtctgcaactccagtgaatgacatgtat
gctgactctgttctaactgcaatactgcaagcagaaaatttggactcttcacaaaaaatt
tatcccactgctacaaaaatggatcgcatgcactttaaggaatgtctaattgagatgctg
caggatatgttcggagaagattcagttcccaaaatttttaagggagaaaaattatatgtt
agtgtggatggcaaaaaggctaacattgatttagtaaatttggaagttatttgtgaggat
gatgacacattccagcagattattcaaacagccgttaccaagctccatcaatctcttgca
ccacctcatatgtaa
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