Frankliniella occidentalis (western flower thrips): 113207326
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Entry
113207326 CDS
T07591
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113207326
03036 Chromosome and associated proteins [BR:
foc03036
]
113207326
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113207326
Chromosome and associated proteins [BR:
foc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
113207326
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
S1
SH2
Tex_central_region
HHH_9
Tex_YqgF
SPT6_acidic
HHH_3
Spt6_S1
S1_RRP5
Tex_N
OB_RRP5_4th
HTH_10
Motif
Other DBs
NCBI-GeneID:
113207326
NCBI-ProteinID:
XP_052125886
UniProt:
A0A9C6U5W8
LinkDB
All DBs
Position
Unknown
AA seq
1481 aa
AA seq
DB search
KRKKSDDEDDLDDRLEDEDYDLLEENLGVKVERKKRFKRITADESEDEQEVDRGDERDVV
ANELFEGSDNEADEREEDRSSERRDETAGDFDEEGDEDGDDYSDADDFIVDDEGRPITDK
RKKRKPIFTDAALQEAQDIFGVDFDYDEFDKYDQEEEEYEEDEDYQEEDDPGRRRKAKKT
SKKSIFEIYEPSELKRGHFTDLDNQIRNTDIPERMQLRDTPVTPECDEKLEEEATWIYKQ
AFCKPSISTQRGLNSESDKTRKYPVATQYKIKKALDFMRNQSLEVPFIAFYRKEYVSPEL
TLSDLWKVYKYDEKWCQLLARKQTLIKLFEKMRDYQGEQLTKDSTADIPEDVRVLTDDDI
DRVRAVQTPEELRDVHMHFLLYYSHEVPAMQIACKTKEKLERQQRKEAQRNRRERRKKKK
TIVNDDGEEEEVTDEDVEDDDDLEDEEDDVEEDEPQDQVKQAVWSGPYSMCRKARLAGFA
KRFGLSPEQFAENLRDNYQRHEVEQESVEPLALAKEYISAQFQNSEEVLKAVKYMVAAQL
SREPLVRKCVREALFERSKIDVVPTKKGIKEIDENHPIYGLKYLKGKPVRDLSDEQFLKL
VMAEEEKNITISFSDQIEGLTTASFIDEAKQLYLRDEFIKHVQEWNTIRVECVDLALRKM
LIPEIRKELKSVLHNEAKDCVLRSCCRRLYNWIKVSPYTVEFPDEDEDDYDTSKGLRVMG
LAYVPDYSQAAFACIVAPDGEVTDYLRLPGILKRRNGYREDDKLQKEADLTALRNFISTK
KPHVIVVGGESRDALMVVQDLKNVVKDLVEDDQFPSINVEIVDNDLAKIFANSIKAENEF
RDYPLLLRQAISLARRLQDPLIEYSQLCTSDEEILCLRFHPLQDQLAKEDLLEALYLEFV
NRTNEVGVDINVAVQTGQTANLVQFICGLGPRKGTALIKLLKQTNQRLENRTQLVTSCHM
GPKVFINCAGFIRIDTNSLGDSTEAYVEVLDGSRVHPEAYEWARKMAVDALEYDDEDANP
AGALEEILESPERLKDLDLDAFAEELERQGFGNKSITLYDISNELNHRYKDMRTPFASAN
PEELFGILTKENPETFYLGKMILATVIGIQHRKPQHGQLDNANPVRNNETDLWQCPFCLK
NDFPELSEVWNHFDAEICPGKATGVKLRLDNGIQGFIHIKNLSDKHVRNPEERVKTNQII
HCRITKIDLNRFSVECTSKSSDLMDANHEWRPNRDPYYNTERESKDKKAEENVKMKQQHA
YIKRVIVHPSFHNISFKEAEKLMASLDQGECIVRPSSKGEDHLTLTCKLADNTYQHIDVR
EEGKENSFSLGQSLWIGKDKFEDLDEIIARHVNPMASYARDLISCKYYRETMGGKKDKAE
EILKDERRRNPNKIHYIISASQSLPGKFMLSYILNRCRHEYVTVTPDGFRFRQQMFDNLN
ALFKWFKEHFRDPIPGSTPSTPRAGMTSRTPFPANPVTKLM
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
aagagaaagaaaagtgatgacgaagatgacctggatgatcgtctagaagacgaagactat
gatttgctagaggaaaaccttggtgttaaagtagagaggaagaaacgatttaagcgcata
acggcggatgaatctgaagacgagcaagaggtagacagaggagatgaaagggatgtagtg
gcaaatgagctgtttgaaggatcagataatgaggctgatgaaagggaagaagatcggtcc
tcagaacgtcgagatgaaactgcaggcgattttgatgaagagggtgatgaagatggagat
gattattcagacgctgacgattttattgttgatgatgaagggcggcctatcaccgataaa
cgtaaaaagcgaaaacctatttttacggatgcggctcttcaagaagcacaagatatcttt
ggagttgattttgactatgatgagtttgataaatatgatcaagaagaggaggagtatgaa
gaagatgaagattaccaagaagaggatgatccaggaagaaggaggaaagcaaagaaaaca
tcaaagaaatctatatttgaaatttatgaacctagcgaactaaagagaggtcattttact
gatctggataatcagattcgtaacacagacataccagaaaggatgcagttacgtgataca
ccagtaacaccagaatgcgacgaaaagttagaagaggaagccacttggatctacaagcaa
gccttttgcaaaccctctatttcaactcagcgtggtttaaattctgagagtgataagaca
agaaaataccccgttgctacacaatacaagattaagaaagctcttgatttcatgagaaat
caaagtttggaagttccttttattgcgttttataggaaagagtatgtctctccagagctc
acactaagtgatctgtggaaggtgtacaagtatgatgaaaagtggtgtcagttattggca
cgcaaacaaacacttattaaactgtttgagaaaatgcgtgattatcaaggggagcagcta
actaaggacagcacagcagacattcctgaagatgtcagagttttgacagatgatgatatt
gaccgagtgcgagccgttcagactccagaagaactccgagatgtgcacatgcattttctc
ctatattactctcatgaggttccagctatgcaaatagcatgtaaaactaaagagaaactt
gagcgacagcaacgtaaagaagcacaacgtaatcgtcgggagagaaggaagaaaaagaaa
acaatagttaatgatgatggtgaagaagaggaggttactgatgaggatgtagaggatgac
gatgatcttgaagatgaggaagatgatgttgaggaggatgaacctcaagatcaagtgaaa
caggctgtttggtctggaccatatagcatgtgtcggaaagcacggttagcaggatttgcc
aaacggtttggactctcccctgaacaatttgctgaaaatctgagagataattaccaacga
catgaggtggaacaggaatctgttgaacctcttgctttggctaaagaatatatctctgcg
caatttcagaattctgaagaagtcttgaaggctgtaaagtacatggttgctgcacaattg
tcaagggagccattggtacggaaatgtgtcagagaggcgcttttcgagcgttccaaaatt
gatgttgtacccaccaagaagggtataaaggaaatagatgaaaaccaccctatttatgga
ttgaaatatttgaaagggaaaccagttcgtgacttgtctgatgaacagtttttgaaactg
gttatggctgaggaagaaaagaacataactatttcattctctgaccaaatagaaggcttg
accactgcttcttttattgacgaagccaagcaactttacctaagggatgaatttatcaaa
catgtccaagaatggaatacaattcgggtagaatgtgttgatcttgctcttcgtaaaatg
ttaattcctgaaataagaaaggaactgaagagtgtcttacacaatgaggcaaaggattgt
gttctgcggtcctgttgccggcgtttgtacaattggattaaggtttcaccctacactgtt
gagttcccagatgaagatgaagatgattatgacacgtcgaaggggcttcgtgtcatgggt
cttgcatatgtgcctgattattcccaagctgcgtttgcgtgtattgttgccccagatgga
gaggtgactgactacctacggttgccaggcattttaaagaggcgcaatggttacagggaa
gatgataagcttcaaaaggaggcagaccttactgcactacgcaatttcatctcaactaaa
aagcctcatgttattgttgtcggtggagagagcagagatgcattaatggttgttcaggac
ctgaaaaatgttgtaaaagatttggtggaggatgatcaatttccttccatcaatgttgaa
attgttgacaatgaccttgccaaaatttttgccaactctattaaggcagagaatgagttc
agagattatcctctgcttttgaggcaagccatatcgcttgcacgccggttacaagatcct
ttaatagagtactctcaactatgcactagtgatgaagaaattttatgtcttcggtttcac
ccccttcaggaccaattggctaaagaagacttattggaagcattgtacctggaatttgtg
aatcgaacaaatgaagttggagtagatatcaatgttgctgtacaaactggccaaactgct
aaccttgtgcagttcatttgtgggcttggccctcgtaaaggaacagctttaatcaagctt
ctaaagcagacgaatcagcgtttggaaaaccgtactcaattagtaacatcatgtcacatg
ggacctaaggtttttattaattgtgctggattcatccgtattgacacaaactcattggga
gacagtactgaagcatatgttgaagttcttgatggatctcgtgtgcatcctgaagcctat
gaatgggcaaggaaaatggcagtggatgccttggagtatgatgatgaggatgccaaccct
gctggagcgttagaggaaattttggagtctccagagagattaaaggatcttgatctggat
gcttttgctgaagaacttgaaagacaagggtttggcaataagagcataaccttgtatgac
ataagtaatgaacttaaccataggtacaaggacatgcgtactccatttgcctctgctaat
cctgaggaactttttggtattttaaccaaggagaatcccgaaacattttatcttgggaaa
atgattttggctactgtcattggcattcaacatcggaaaccacaacacgggcaattagat
aatgccaaccctgttaggaataatgagactgacttgtggcaatgtcctttctgcctgaaa
aatgattttccagagctttcagaagtttggaatcattttgatgctgaaatatgtccagga
aaagctactggtgtgaagttacgactagataatggtattcaaggtttcattcacattaaa
aacttgtcagataaacatgtccgtaatcctgaagaaagagttaaaacaaaccagataatt
cattgtcgtataacgaagatagatttgaatagattttcagttgaatgtacctccaaatct
tcagacctcatggatgccaatcatgaatggagacctaatcgagatccatattataatacc
gagagggagtcaaaggacaaaaaagcagaagaaaatgtgaagatgaagcaacaacatgcc
tacatcaaaagagttattgttcatccttcattccataatatttcatttaaggaagctgag
aaactcatggcttctcttgatcagggtgaatgtattgtcagaccatctagtaagggagaa
gaccatttgactctaacttgcaaactggctgacaatacatatcagcacattgatgtaaga
gaagaaggtaaagagaactctttttcacttggtcaatctttgtggattggcaaagataag
tttgaagaccttgatgaaatcatagctcgccatgtcaatcccatggcttcatatgctcgt
gatttgatatcatgtaaatactatcgtgaaactatgggggggaaaaaggacaaggcagaa
gaaatactgaaggacgaaagacgaagaaatccaaacaaaattcattacataatatcagca
tctcagtccctcccaggaaaatttatgctttcatatatattaaatcgatgcagacatgaa
tatgtgactgttacacctgatggatttagatttagacaacaaatgtttgataatttgaat
gcactttttaagtggtttaaagaacatttcagagatcctattccgggaagcacaccaagc
actcctcgtgctggaatgaccagcagaacacccttcccagcaaatcctgtaacaaaactg
atgtaa
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integrated database retrieval system
