Frankliniella occidentalis (western flower thrips): 113208949
Help
Entry
113208949 CDS
T07591
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03020
RNA polymerase
foc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113208949
09124 Replication and repair
03420 Nucleotide excision repair
113208949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113208949
03400 DNA repair and recombination proteins [BR:
foc03400
]
113208949
Enzymes [BR:
foc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113208949
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113208949
DNA repair and recombination proteins [BR:
foc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113208949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
113208949
NCBI-ProteinID:
XP_026282025
UniProt:
A0A6J1SRR2
LinkDB
All DBs
Position
Unknown
AA seq
1175 aa
AA seq
DB search
MYEVDDDNFEDEELEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPQIDLQAEAQHTSGEIETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKCEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKERDYNNYGWQMLVASG
VVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRNNCQG
MRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTRRHTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGVQYRQEDMPFTCE
GLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISQLLQDYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVT
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaagtagatgacgataattttgaggatgaagagctggaggaaatatcttcagag
ctctggcaagaagcctgctggattgtcatcaatgcctactttgatgaaaagggtttggtg
cggcaacagttggattcttttgacgagttcatccaaatgtcagtccaacgtattgttgaa
gactctccacagattgacttacaagcagaagcccagcacacctctggagaaattgaaaca
cctcctcggtaccttttgaaatttgagcaaatttatttgtcaaagccaactcactgggaa
aaagatggtgctccctctcccatgatgcctaatgaagctaggttaagaaatttgacatat
tctgcccctctgtatgtggatatcactaaaacaattgtaaaagaaggagaagaacctata
gaaactcaacatcagaagacgtttattggcaaaattcccattatgctccggtctacttat
tgcttactgaatggtctgactgatcgtgatttgactgaattgaatgaatgtcctcttgat
cctggtggctatttcattattaacggttctgagaaggttcttattgcccaagagaaaatg
gcaaccaacactgtctatgtgttttctatgaaagatggaaagtttgcatacaaatgtgaa
attcgttcatgtttagaacactcctctcgacccacatcaacattgtgggtcaatatgatg
gcacgaggtggacagagcatcaagaagtcagccattgggcaacgtatcattgctattttg
ccatacatcaagcaagaaattccaatcatgattgtctttcgtgctcttgggtttgttgct
gatcgtgatatcttggagcatattatttatgattttgatgatccagaaatgatggaaatg
gtcaaaccatctttggatgaagcttttgtaattcaggaacaaaatgttgcattaaatttt
attggtgctcgtggtgccagacctggtgttacaaaagaaaaacgtatcaagtatgccaaa
gaaattttacagaaagaaatgttgcctcatgtgggtgtatccgatttctgtgaaacaaag
aaagcctatttcctagggtacatggtacatcggctactcctcgctgctcttgggcgtcgt
gaattggatgacagagatcactatggaaacaagcgccttgatttggctggtcccctcctg
gctttcctcttccgagcgctcttcaaaaaccttatgaaagaagtaagaatgtatgcccaa
aagttcattgatcgaggaaaagattttaatctagaactggcaattaaaacaaaaatcata
actgacgggctaagatactctctggctactggaaactggggtgaccagaaaaaagctcat
cttgccagggcaggtgtctctcaggtgttaaacagactgacttttgcgtcaactctttca
catctccgccgtgtaaattctcctattggtcgtgatggcaaacttgccaaacctcgtcag
cttcacaatactctttggggaatggtgtgtcctgcggaaacaccagaaggtgctgctgta
ggtcttgtcaaaaatttggctcttatggcttacatttctgttggatctcaaccatctcca
attttggagttcttggaggagtggagtatggaaaatttggaagaaattgctccttcagct
attgctgatgccaccaaaatatttgtaaatggttgttgggttggtattcacagagatcca
gaacagctcatggcaactctcagaaagcttagacgtcagatggacatcattgtatctgaa
gtatctatgatcagagatatcagagatcgtgaaatccgtatctacactgatgcaggacgc
atttgtaggcctctgctgattgtagaaaatggtcaacttttattgaaaaagagaaacatt
gatcagctgaaggagagagattacaacaattatggctggcagatgctggttgcaagtgga
gtggtagaatacattgacacactagaagaagaaactgttatgatagcaatgtctccagat
gacttgcgacaggacaaagaatatgcatactgcacaacatatacgcattgtgaaattcat
cccgccatgatcttaggagtttgtgcatccatcattcccttccctgatcacaaccagagc
cctcgtaatacttatcagagtgctatgggtaagcaagccatgggtgtttatattacaaat
taccatgtccggatggacactcttgcccatgtgctttattatccccacaaacctttggtg
acaacacgctccatggagtatttacgtttccgagaacttcctgctggcatcaactcaatt
gtagcaattttgtgttacactggttataatcaggaagacagtgttattctgaatgccacc
gctgttgaaagaggctttttccggtctgtcttttatcgttcatacaaagatgctgaatcg
aaaaggataggagaccaggaagagcagtttgaaaaacccaaccggaacaattgccaaggt
atgagaaatgccatctatgataaattggatgatgatggtattattgcaccaggcttgcgt
gtatcaggagatgatgtagttattgggaagacaattactcttcctgaaactgatgatgat
ctggatggtaccacacgccgtcacacaaagcgagatgcaagcacttttctacgtaatagt
gaaactggtattgttgaccaggtcatgctcacattaaattctgaaggctacaaattctgt
aaaataagagtgaggtcagttcgtattcctcaaattggtgacaaatttgcctctcggcat
ggacagaaaggtacatgtggagtgcagtaccgtcaagaggacatgccatttacttgtgaa
ggactcactccagacattataattaatccccatgccattccctcaagaatgacaattggc
catttgattgaatgtttgcagggcaaggtctcttctaacaagggtgaaattggtgatgct
actcctttcaatgatgctgtaaatgtacaaaaaatttctcaacttcttcaagactatggt
tatcatctgagaggtaatgaagttatgtacaatggacacactggacgtaaaatcaatgcc
caggtctttttgggacccacatattaccaacgtcttaaacacatggtggatgacaagatt
cactcgagggcacgtggacctgtccaaatcttagtccgtcagcctatggagggcagagct
cgtgatggtgggcttcgttttggtgagatggagcgagattgtcaaattgcccatggtgca
gctcagttcctgagggaacgtttgtttgaggtctctgatccataccgcattcatgtctgc
aatttctgtggtttaatagcaatagcaaatcttcggaacaatactttcgagtgcaaagga
tgcaaaaacaaaacacagatatctcaagtacgcttaccatatgcagcaaaattattattc
caagaactgatgtccatgaatattgcccctagacttatggtcacgtaa
DBGET
integrated database retrieval system
