Frankliniella occidentalis (western flower thrips): 113208969
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Entry
113208969 CDS
T07591
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113208969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113208969
03012 Translation factors [BR:
foc03012
]
113208969
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113208969
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113208969
Translation factors [BR:
foc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113208969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
nSTAND3
AAA_22
AAA_14
ATPase
NACHT
AAA_19
NPHP3_N
PhoH
Sigma54_activat
AAA_16
ABC_tran
CCDC66
AAA_23
Motif
Other DBs
NCBI-GeneID:
113208969
NCBI-ProteinID:
XP_052123195
UniProt:
A0A9C6TVP9
LinkDB
All DBs
Position
Unknown
AA seq
1081 aa
AA seq
DB search
MDDRFRREEEDFFRRNRGLKEFGDSSSASGGHQSKKFTNFRNRKSHRGSQSQSYSEDGPS
TSQGWRGKRGGGGGGGRGRERGGRRGEGGYSRKEDTQGEARGGFKRHPPHLKGREIGLYY
AKLSKAKKEAEGGSERKKRDYKLEGGITIAIDPKKEQQIRSMLLNLPQHLACSKSSASSS
VDVKIEPGCSFEEVRKKPETLQKVNSLDDVSAASKYNHLQDSHFKTNFLRSLTESIDSKI
ERLLQRHIALERKPSVDKKLKDLLLDKKNNNQRYISMYEGRKKLPSFQMQDSILKLIRDN
QVVVISGETGCGKTTQVAQFILDDFILRGDGSLCRILCTQPRRISATSVAERVACERDEK
IGSISVGYQIRLEKAVAPKQGSILYCTTGILLEWMQSDPSLADTSHIILDEIHERDTVSD
FVITLLKDILPKRPDLKIILMSATLNADHFSRYFNSCPSINIPGFTYPVEEFYLEDVIEM
LNFKYPPSKKRQRNESKEFVEIIGPFMRSLERNRKYSRSTVEALQNPFSEEINYDLMSRL
ITDICKNKPDGAILVFLPGWEHISKLNTALTSLDYFKSSRFKIIPLHSLMPTTVQRSVFD
RPPPGTRKIIIATNIAETSITIDDVVYVVDCGKIKMKNYDTENNIQTLNPEWVSLANAKQ
RRGRAGRVQPGICYHLYSKGREMTFESYPLPEMLRSRLDEVIIRAKMLQLGAVRPFLNRV
MNPPDPLAVDHSLELLTLMNVLDSDENLTPLGYHLGKLPVDPHTGKMLLMGALFSCIDPV
CSVAASLSFKDAFMIPLGKEKEVDRIRLALSEGRKSDLLLIGDVLIRWEEECKRGRGGSF
CWENFLSQNTLTMLRDLKKQFVHYLHDMKFLQSSNPMDYASNVNSNNASLVKAIVCAGLY
PNVAYLHKCRNIGNGRNVKRLTTPQDGRVVMHPKSVNDKESYFPSPFFVYHLKLKSANIT
LHDTTMVYPLPILFFGESLRFFVEDGREKIAVGKYFQMRCKKSIASIVMDLREHMNRLLE
YRASHPDVIPWENKKDPHTTLLRAIVELITYEDAGVVMQESSDEESDNSDVIIESISDGE
W
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcgcttcagaagagaggaagaggacttctttcgtcgaaatagggggctaaaa
gaatttggtgactcttcaagtgcttctggtggccaccagagtaagaaattcaccaacttt
cgcaacaggaaatcgcaccgtggtagtcagtcacaatcatattccgaagatgggccaagt
acgagtcaaggttggagagggaaacgtggaggaggaggaggaggcgggagaggtcgagag
agaggagggcgtagaggagaaggtggttattctagaaaagaggatacgcaaggagaggcc
cggggagggtttaagagacatcctcctcatttaaagggtagagagattggtttgtactat
gcaaagttaagcaaagcaaagaaagaagcagaaggtggaagtgaaaggaagaagcgtgat
tataaattggaagggggaataactattgcaattgatccaaaaaaagagcaacagattcga
tccatgctgctgaacctgccccagcatttagcttgctccaaatcttcagcgtcatcaagt
gtggatgtcaaaattgaaccaggttgctcctttgaggaagtccgtaaaaagcctgaaaca
cttcagaaagtgaacagtttagatgacgtttcagcggcaagcaagtataaccacctgcaa
gatagtcatttcaaaacaaattttttgagaagtttgacagaatcaattgatagtaagatt
gaaagattacttcaacggcatattgcccttgaacgcaagccttctgtagacaagaaatta
aaggatttgcttctagataaaaagaacaataaccaaagatacatcagtatgtatgaaggg
aggaaaaaattgccctcattccaaatgcaagattcaattttaaagcttatccgagataat
caagttgttgttattagtggggaaacaggttgtggtaaaactactcaagttgctcagttt
attcttgatgactttattctccgaggtgatggttcgttgtgtcgaattttatgcacacaa
ccccgtcgtattagtgcaacttctgttgctgaacgtgtagcatgtgaaagagatgaaaag
attggctccatatctgttgggtaccagatccgattggagaaggctgttgcaccaaagcag
ggatcaattttatactgtacaacaggaattctgctggaatggatgcaatctgatccttct
cttgccgatacttctcatataattctagatgaaattcatgaaagagatacagtttcagac
tttgtaattactctactgaaagatatcctaccaaagcgtccagatcttaaaataatactt
atgagtgcaaccctcaatgctgatcatttctctcggtatttcaattcctgcccatccatt
aacattccgggtttcacataccctgttgaggaattttaccttgaagatgtcattgaaatg
ttaaatttcaagtatccaccatctaagaagaggcagaggaatgaaagcaaagaatttgtg
gagattattggccctttcatgaggtcattagaaagaaataggaaatattctagaagtact
gtagaagctttacaaaatcctttttcggaagaaatcaattatgatttgatgtcaaggctg
atcactgacatttgtaagaataaacctgatggagcaattcttgtgtttttacctggttgg
gaacacatatccaaacttaacactgcattgacttctttggattactttaaatcttccaga
tttaaaattattcctcttcattctctcatgcccactactgtccaacgatcagtctttgat
cggccacctccaggaactaggaagattataattgctactaacatagctgaaacatccatt
acaattgatgatgttgtgtatgttgtggattgtggaaagattaaaatgaagaattatgat
acagaaaataatattcaaacccttaatcctgaatgggtgtctcttgccaatgccaagcag
agacgaggacgtgctggcagagtacagcctggtatctgttaccatctttattctaaagga
agagaaatgacttttgaaagttatccactacctgagatgttgaggtcacgtcttgatgaa
gtcataataagagcaaaaatgttgcagttaggagcagtccgccccttccttaatcgtgtc
atgaatcctccagatcctttggccgttgatcactccttagagttactaacattgatgaat
gtgttagattcagatgagaatctgactccacttggctaccacttaggtaaactgccagta
gatcctcacacagggaagatgcttctcatgggtgctttattcagctgcattgatcctgtg
tgctcagttgcggccagtcttagtttcaaagatgctttcatgattcctcttggcaaagaa
aaagaagttgaccgcataagattggcattatctgagggacgcaaaagcgacctcctgctt
attggagatgttctcatacgatgggaggaagagtgtaaaagaggaagaggtggctctttt
tgttgggaaaattttctctctcaaaacactttaacaatgttgcgtgacctgaagaaacag
tttgtccactacttacatgacatgaagtttttgcaatctagtaatcccatggactatgct
tcaaatgtgaattcgaacaacgcaagcctggtgaaggccatagtatgtgcaggattatac
ccaaatgttgcctacctgcataagtgtcggaacattgggaatggaagaaatgtcaagagg
ctaactactccccaagatggtagagtagttatgcatcctaaatctgttaatgataaagaa
tcatattttcccagccctttttttgtataccatctaaagttaaagagtgcaaatattact
cttcatgacactacaatggtttaccctcttccaatattattttttggggaaagccttaga
ttttttgttgaggatggtcgagagaaaatagctgtgggaaaatattttcaaatgagatgc
aaaaagtcaatagcttctattgtcatggatctgcgtgagcacatgaatcgtttattagaa
tatagagcaagccatccagatgttataccctgggaaaataaaaaggacccacacacaact
ctcctaagggccatagttgagcttatcacctacgaagatgcgggtgttgtgatgcaggaa
tctagtgacgaagaaagtgataacagtgatgttatcatcgaaagcatttcagatggagaa
tggtaa
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