Frankliniella occidentalis (western flower thrips): 113209154
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Entry
113209154 CDS
T07591
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113209154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
foc03041
]
113209154
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113209154
Spliceosome [BR:
foc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113209154
Complex B
113209154
Complex C
U2 SnRNP specific factors
113209154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
MscL
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
113209154
NCBI-ProteinID:
XP_026282321
UniProt:
A0A6J1SV37
LinkDB
All DBs
Position
Unknown
AA seq
815 aa
AA seq
DB search
MSYNRGSDGKPRGFGFGGFQMSKREQRSAAIPPPPSSNVSKHGYSTMSSITQNAMVASGW
GGPKKRAKTEDEYFEDDDESSAAPQLAYIPAPGSPSYEGNKKDSDSEEDPLDAFMAGIEQ
QVTKEKKRADSAKDKIEEDKSKGIRDDIDGEDVEESYYRYMEENPMAGVQNEDEDDEMEY
DEDGNPIVTIKKKIIDPLPPIDHSTITYTPFEKNFYNVHEEISSLSPAQVAELRHKLGLK
VTGVLPPHPVTSFPHFGFDDPLIKTIRKLEYTQPTPIQAQAVPAALGGRDIIGIAKTGSG
KTAAFIWPLLVHIMDQRQLKPGEGPIGLILAPTRELSQQIYNEAKRFGKVYGIQVCCCYG
GGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLERVSFLVLDEADRMFDMGFEPQVR
SICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPIRIVQGDVGEANEDVTQIVLVLSSLP
AKWTWLLGHIVEFLSAGSVLIFVTKKANAEELANNLRLKEYECLLLHGDMDQIERNKVIT
NFKKQECNIMVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLV
TDKDKEFAGHLVRNLEGANQEVPGTLLDLAMQSAWFRKSRFKGGKGKKLNVGGQGLGFRE
RPGLGSGDSGGSSSGGQKKPGPAASAYGSLNSSSLPSEGQRARGPGSDRLGAMKDAFRAQ
YMSQFTASEDTTWEKTMQKSDYGSVKHEGSNKTSNSSSSSSSSGGTTLSSGTYIAGGPPR
NLNYPPPPPFVAASSSSDSSSRSDSRKKRSRWDDN
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgagctacaacagaggatctgatggaaaaccccgaggatttggctttggaggtttccaa
atgtctaaacgtgagcagcgatctgcagcaatcccaccaccaccatccagcaatgttagc
aagcacggctactccactatgtcatcaatcactcaaaatgctatggttgccagtggatgg
ggtgggcctaaaaagagggcaaaaactgaagatgaatactttgaagatgatgatgaatct
tcggctgcacctcagctagcatacattccagcaccaggtagcccatcgtatgaaggcaac
aaaaaagattcagactcagaagaagatcctcttgacgctttcatggctggcatagagcaa
caagtaactaaggagaagaagagggctgatagtgccaaggataaaattgaagaagataaa
tccaaaggcataagagatgatattgatggtgaggatgttgaagaatcgtattacaggtat
atggaagaaaatccaatggctggtgttcaaaatgaggatgaagatgatgaaatggaatat
gacgaggatggaaaccccattgtcactattaaaaagaaaattattgaccccctgcctcca
attgaccattcaacaattacttacactccatttgagaaaaacttttacaatgttcatgag
gaaattagtagtttatcacctgctcaagtagccgaactacgtcataaacttggcctaaag
gtgacaggggtgttacctcctcaccctgttacaagctttccacactttgggtttgatgat
ccactcattaaaactattcgtaagcttgaatatacacaacccactcctattcaagcacaa
gctgtccctgctgctttgggaggaagagatatcattggtattgcaaaaactggaagtggt
aagactgctgcctttatatggcctcttctcgtccacataatggatcaaagacagctaaaa
ccaggggaaggaccaataggtcttatattagctccaacaagagaactttcacaacagatc
tacaatgaagccaagcgatttggtaaagtgtatggaattcaagtttgctgctgctatggt
ggtggatcaaagtgggagcagagcaaagctctcgagtcaggagcggaaattgttgtagct
actcctggtagaatgattgacttggtgaaaatgaaagctactaatctggaaagagtcagt
ttccttgtgttggatgaggctgatagaatgtttgacatgggttttgaaccgcaggtgcga
tcgatttgcaatcatgtcagaccagatcgccagactttgctattcagtgcaacattcaaa
aagagagtggagaaacttgcacgtgatgtgttgactgatccaatacgtattgttcaggga
gatgtaggagaagcaaacgaggatgtcacccaaattgtgctggttctcagctctctccca
gctaagtggacatggctgttaggtcatattgttgaatttttatcagctggaagtgttcta
atatttgtcactaaaaaggctaatgcagaggagttggctaacaatttgagactgaaagag
tatgaatgtctgctgttgcatggtgatatggaccaaatagaaagaaataaggtcataacc
aattttaaaaaacaagaatgcaacattatggtggctacagatgttgctgcacgtggtctg
gatattcctcacataagaactgttgttaattatgatattgcccgagacattgatactcac
acccacagaatagggcgaacaggtcgtgctggtgaaaagggaactgcatacacactggtc
acggataaagacaaggaatttgctggtcatcttgtgcgcaatttggaaggtgcaaatcag
gaagtccccggtaccttgttagatctagctatgcagagtgcttggtttagaaagtcacgc
ttcaagggcggcaagggcaaaaagctcaatgttggaggacaaggactgggattcagagaa
agacctggattgggaagtggtgatagtggtggtagcagtagtggtggtcagaagaagcca
ggcccagccgcctctgcctatggaagccttaactcaagttcattaccatctgaaggtcag
agagcaagaggtcctggatcagatcgacttggggccatgaaagatgccttccgagctcaa
tacatgagtcagtttactgcatctgaggatacaacttgggaaaagacaatgcagaaatct
gattatggtagtgtaaaacatgaaggcagtaacaagaccagtaattcaagcagctccagt
agcagcagtggtggaaccactctcagttctggcacatacattgctggtggtccacccaga
aacttaaactaccctcctcctcccccctttgttgcagcatcatcatctagtgatagctca
tcgaggtcagactcgagaaaaaaaaggagtaggtgggacgacaattga
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integrated database retrieval system
