Frankliniella occidentalis (western flower thrips): 113210643
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Entry
113210643 CDS
T07591
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8 isoform X1
KO
K18734
protein SMG8
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113210643
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113210643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
113210643
NCBI-ProteinID:
XP_026284522
UniProt:
A0A6J1SUH7
LinkDB
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Position
Unknown
AA seq
925 aa
AA seq
DB search
MGSVSFKFPTSFGDISHPPPPDPPVVIVSFFGKSSYISRGFKGSAVDDALGRQVFCSSVL
DFPQVDGDAHTEIKGYLDFKQKVLYLHLCGTFDVRGLADIYEKLKTDLGSKGYLKEWAKL
RHHYARSLLFLFSVSHVLVCSHPSLVFDTSYIRLFRALDSVRQKVQGSIGDIISTISGVP
KDWVQYGRLCTPRLLFLFEKCPASIKKQSLSENGETPGSNRKVPAIKKLEHAMEDQIYHV
LRKNRIISKSSMNSLFAIPANQEFVFIPTSRDSMRDSRTELIDSVISMCNGTSFGPEQQD
EHSFHSPSFLNEMNLNRHSFKGFLQQHIEQAFSKGFDDNVGRHSAPTFFEVPKFSLWLEV
SKKVFEFSTSPKSASNSNQSAMLHGLLDTDVKFSESRCGKVLPLAIATYQENLPTHYTRE
YHDGRLAHALSVFAVHARGPLFEEYAKQVETECEAHWKAGKQMCQVLSLTGNPCTKPLHK
GGGDGAGGGELQEEEGRDHSQLPLMEHCSGVVYVSACNCGRKQGPREDPFSMRTSNHDFY
TVLGKDCGCCDLESITFPVFTPSTKDFRAAQLFSNKKAGKANTEPRDTEATTPQGNTQGL
SFAAYVSGPSGGSDIIAEETSNLIPAKTDSETDSGSNAIVIQVSDTDSEGSKEKCLVRQP
STTEYLPGMLHSESPLGLLPQFPSWSLVCLGPSSLYSHNLGLQEQQQAGLMPGSAYLLPW
DLTVRLEHQQDRPNAWPTVGDAAFTRGNKPLASSVLQRPRKTKRDTSEFVVKIFVGVEYE
CPRGHRFMCSAPDKVLKTSGSGLVKDNGNKITGNDMPLYFPCPCKNSKPLIAQLMRVHVV
TPKAPVHVTLNPKVQPAPSPCPIFGPGCEKPIRLSQSAYWILRLPYVYVGDQGPYISPKE
PVPISYGRLLAGMYGIMELSPTEKT
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgggctcagtttccttcaaatttccgacttcattcggggacatcagccatcccccacca
ccagatcctccagttgtcattgtttcgttttttgggaagtcatcctacatctctagaggc
ttcaaaggaagtgctgttgatgatgcccttggacgtcaagtcttctgctcatcagtgtta
gactttcctcaggttgatggtgatgctcacactgaaattaaaggatacctggactttaaa
cagaaggtactttacctacatttatgtggtacatttgacgttagaggactggctgatatt
tatgaaaaattaaagactgatctgggttcaaaaggataccttaaagagtgggccaagtta
cgacatcactatgcccgatcacttctttttttgttcagtgtctcacatgtactggtatgc
tcacatccttcacttgtatttgatacaagttacatacgtctttttcgtgccttagatagt
gtccgccaaaaagttcaaggatctattggtgatatcatctctactatatctggtgttcca
aaggattgggttcagtatggaagattatgtacacctcgtttactttttctatttgaaaag
tgccctgcatctatcaaaaagcaaagtttatctgaaaatggagagacacctggatcaaat
agaaaggtgcctgctattaagaagctggagcatgctatggaggatcaaatttatcatgtt
ttgcgtaaaaaccgaatcatatctaagagcagtatgaatagtctctttgctatcccagca
aatcaggaatttgtttttattcctacatccagggattcaatgcgtgactcaagaacagaa
ctcatagacagtgtcatcagcatgtgtaacggcacatcttttggtcctgaacaacaagat
gaacattctttccattcaccatcattcctaaatgaaatgaacttaaatcgacattccttt
aaaggatttttgcaacagcacatagagcaagcattttctaaaggttttgatgataatgtt
ggcagacattctgcaccaacattttttgaagttccaaagttcagtttatggctggaagtt
tccaaaaaagtgtttgaattttccacatcacccaagtcagcttctaactcaaaccaaagt
gctatgctccatggcttgcttgacaccgatgtcaaattcagtgaaagtcgctgtggaaag
gtgctgccacttgccatagcaacataccaggaaaatctaccaactcactataccagagaa
tatcatgatggaaggttagctcatgccttgtcagtatttgctgtccatgctcgggggcct
ctctttgaggaatatgcgaagcaggtggaaaccgagtgtgaagcccattggaaagcaggc
aagcagatgtgccaggtgttaagccttactggcaatccatgcacaaaacctttacacaaa
ggtggaggtgatggtgcaggaggaggggagctccaagaagaagaggggagggatcactct
cagttaccgttaatggaacattgtagtggagtcgtgtatgtttctgcttgtaactgtgga
agaaagcaggggccaagagaggacccattcagtatgagaacttcaaaccatgacttctat
acagttttaggaaaggattgtggctgttgtgatcttgagtccattacttttcctgttttc
actcctagtactaaagattttcgggctgctcagttgttttcaaataagaaagcaggaaag
gctaatactgaaccgcgggatactgaggccactactcctcaaggaaatactcaaggactt
agctttgcagcttatgtctctggaccatccggtggtagtgatattatagcagaagaaaca
agtaatctaattcctgcaaagactgatagtgaaactgacagtggaagtaatgctatagtg
atccaagtttctgacactgattcggaaggttccaaagaaaaatgtttggtgcgtcagcca
tctacaacagaatacttgccaggaatgcttcattcagaatctcctcttggacttcttcca
caatttccttcatggtcattagtgtgccttggaccatcaagtttgtattcccacaatctt
ggtcttcaagagcaacaacaggcgggcctaatgcctggatctgcatatctactaccttgg
gatttgactgtcaggcttgagcatcaacaggaccgccctaatgcatggccgacggttggt
gatgctgctttcacaagagggaataaacccctagcaagcagcgtccttcagagaccacgt
aaaacaaaacgtgatacttctgaatttgttgtgaaaatatttgttggagtagagtatgaa
tgtccacgcggccatcgcttcatgtgttcagcaccagacaaagtgctcaagactagtggt
tctggacttgtaaaggacaatggtaacaaaataactggaaatgacatgcctctttacttt
ccatgtccatgcaaaaacagcaaaccactgatagcacaattaatgcgtgttcatgttgtc
actcctaaagcccctgtacatgtcacactgaatcccaaagtacagcctgcaccatcaccc
tgtcccatatttggaccaggctgtgagaaacctatcaggctctctcaaagtgcttactgg
attttaagacttccttatgtatatgtgggtgaccaaggtccttacatctcacccaaggaa
cctgttccaataagttatggccgacttttagcaggaatgtatggcatcatggaactatct
cctactgaaaagacatga
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