Frankliniella occidentalis (western flower thrips): 113211044
Help
Entry
113211044 CDS
T07591
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113211044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113211044
03019 Messenger RNA biogenesis [BR:
foc03019
]
113211044
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113211044
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113211044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
zf_UBZ
OEP
Motif
Other DBs
NCBI-GeneID:
113211044
NCBI-ProteinID:
XP_026285068
UniProt:
A0A6J1SVY1
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MMRQTRRMAVDIRSGAQEAVNTYIVSLADLTVNSKPHINALTMLAEDYLNYAEAIVKAVD
DHLQKVPSSVKLPILYLIDSIIKNVGKVYITLFSRTIVQSFSTVFEQVDEKTRQQMYKLR
QTWNEIFPEEHLYAMDVKVSTLDPKWPITASPASQYVAAAPNSQQAPHKIHINPKFFKPS
PVTTPVADVPPAAGGRVSPTLPSSINSSVPLKPTSTPHQVSAPPKDHPDDEAVLLEQLMQ
RKRNLLRMQQEKELFKKKKASSKPLEKISSDILITSTKEKTPDLPTVYPNSEEVLMVKEI
STKSPEICGAETRVKEPALGVLQIPSNAPRIAPVSSALINLVANQRAQRDPRLSKVSKEE
VVIVEDSSKSQGKVRDPRLTVKAEKRSRSSEKDSTSKISRHHSRESSADRSSSRHSSRRE
ERDKRSSDSRKSNRKSEDRTVSKLKKTSSRSPSKSSSSRSPSKASSSRSPRKSASSRSPS
KSSKSSGKHERRKDSSSSPRKSYSGHRPVSDFADSPESDVSDSKDSGGGTSGPNSSDWAV
SFTKGSHKSRNYVRRNLPEKSPELVGSTGSIDVDFRLSAVQEKQIQLSNPTDRLLLSSSS
TLSAGAPEQILPTIASQDVDLRCLPSSPGKKRRSAEPEDGHPPTKKNKAAHMEMLFGKQD
VDLRQMDLGNGMASDAPSPPPPPIISSPERGAMLKDVNLGWSKFKQTHSPSPAVVRSPAF
PRSSRHDRLGHSTGGSELGLREDTDMRNPMNGLETSKPDFEAILKQATEQYKNGTISHAD
YSQVQMKVFRMHETAKIREAQRNDHSRRDGWERRPKEKDYRHGLGSPDGEQFGDIDERFP
APGVVKKPLLPLPDVPPVALQDGRHPRHMGQRMPGPMQGQGYIRPPRSILGPGPRGPPRG
SWRYSRGGAGFKDSTIALPPADQFILERIAHDPMKTITIDSSPREIRFYGENAVAMMSAD
DPREIAFDPGDASVIINDISISCSFNEQAKEVIINGKTYSVHLGAPTRELYINDEGFECQ
FNCPPKEVLLATGEVLAIQLQSNDAPKVHVGAQRRDLVAGRVMLIIDAETYIPIFLDAKP
QRFDIDGVPHVIKFADALDTVLVNNHPFNIKFGGPAVPITVNNMRHYMRLTELPPDVVPG
EVEIVSMSSHFRKTTRVATGAGAHAAAPWAGPGSAPSLAPTPHASNPARIPETDHEPALP
VRGGLAVLNRGGMPKKIMKLKGRRDPTETLKPARIEERQMPADLYQALQPALRGFLPGSN
NAGYNSTSQAMAGAYGMRQNIGAGPEAAAEVSASNSSTSTATFPSSDPEATTSSGSNGIP
FIQTDLNIHKLLQSLYDTGLIAKKDSNAIKEEKDVKKIHEVDFKDSKSLKVNQPAIIDIL
YSGIQCSSCGTRFPPEQTEKYSAHLDWHFRQNRRDKDSQRKPQSRKWYYDVSDWIQFEEI
DDTLDKAQNWFDTQQTETAKFEEVEEEEIQSVPSKDFPEGTICELCHDRFDQFYNEDKEE
WHLKDCLVADGLPYHPFCYKDYRVSVESKDEEQTEPVEEAESKAEAVDNPSEETEKSKEP
NDDVKKIKEEKSDDVEMEEQAREIKQELEKPSEDAECTNAVVKQEILDDEQSINPEEGLD
AKPDEKGESSGEGNELKEEEQVEETEKQSQEGEEVEGDAEQKDSKDSNAETEAESGDAAG
TAESAEEPKTLEEKLLHDPITDTTSAVVSCSIDGNLELAQAPPTLPAIPNRIKINISKPI
VKPTEEAKDESDREEENGDAECQGSSQQDPSEEKPVVFKPKLLGRRLKELPPMLKGSETS
GLCSLM
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcagacaagaagaatggcagtggatataagatctggagcgcaggaggcggtg
aacacctacattgtctctcttgctgatttgaccgtgaacagtaaacctcacataaacgcg
ctcaccatgcttgccgaagattatttaaattatgcggaggccattgttaaagcagttgat
gatcatcttcaaaaggttcccagctcggtgaagctgcccatcttgtacctcatcgattcc
atcatcaagaatgttggaaaagtctacattaccctgttttctcgcaccattgtacagtcc
ttcagcactgtttttgaacaagttgatgagaagactcgtcaacagatgtataaattacgt
caaacatggaatgaaatttttcctgaggagcacttgtatgctatggatgttaaagttagt
actctggaccccaagtggcctatcactgcctctcctgcttctcagtatgtggcagctgct
cctaattcacagcaggcaccacacaagatccacatcaaccccaaatttttcaaaccaagc
ccagtcacaacacctgtagcagatgtacctccggctgctggtggccgagtcagcccaact
ttgccttcgagcatcaattcctctgttcctttgaagccaacatcaacaccacatcaagtt
agtgcaccaccaaaggaccatccagatgatgaggcagttttacttgagcaactaatgcaa
aggaagagaaatcttttacgaatgcagcaggagaaagagctgtttaaaaagaagaaagcc
agcagcaaaccactggaaaagatttcttctgatatactcattacttccacaaaggagaaa
actccagatctgcctacagtttatcccaacagtgaagaagtccttatggttaaagaaatt
tcaacgaagtcacctgaaatttgtggggctgaaacaagggttaaagaaccagcactaggt
gtactacaaattccctcaaatgcgccgagaatcgcccctgttagctcagccctaataaat
ctagttgcaaatcagcgagctcagcgggaccctcgtctctctaaggtgtcgaaggaagaa
gttgtaattgttgaagactcaagtaaatctcaagggaaagttcgagaccctagactaacc
gtcaaggctgagaaaagatcgaggtcatcagaaaaagattctacctctaaaattagtcgc
catcattcaagggagagttcagctgatagaagtagtagtagacattctagtcgacgagaa
gaacgagataaacgctccagtgatagtagaaagtctaatagaaaatctgaggatcgaaca
gtatccaaattgaagaagacaagtagtcgctctcctagtaaatcttctagtagcagatct
cctagtaaagcaagcagtagccgatctccacgaaaatcggcaagcagtcggtctcctagc
aaatcaagcaaatcctctggaaaacatgaaagaagaaaagatagtagctctagtcctaga
aagtcttactccggacataggcctgtatctgactttgctgattccccagaatctgatgta
tcagattcgaaagacagtggtggtggtacatctggtcccaacagttcagactgggctgtc
agctttactaaaggatctcataaatcacggaactatgtcagaagaaaccttcccgaaaaa
tctccagaacttgttggctcgacaggaagcatcgatgtggacttccgccttagcgccgtt
caagagaagcagatccaactgtccaatcccactgacaggttacttctgtcaagctcttca
acgttatctgcaggtgctcctgagcaaattttaccaacaatagcaagtcaagatgttgac
ctacgctgcttaccatcgtcaccaggaaagaaacgtcgctctgctgaacctgaggatgga
cacccaccaacaaaaaagaataaagctgcacatatggaaatgttgtttgggaagcaagac
gttgatctccgccaaatggatctaggcaatggtatggcatctgatgcaccatcacctcca
ccacctccaatcatctcatcaccagagaggggagccatgctaaaggatgtcaaccttggt
tggtccaagttcaaacaaacacactctccgtctccagcagtcgtccggtctccagcattc
ccacgatcttcaagacacgaccgactgggacactcgactggaggaagtgagttagggcta
agagaggatacagacatgcgcaaccccatgaatggtctggagacatcaaaacctgatttt
gaagctattttgaaacaagctactgagcagtataaaaatggaactatatctcatgcagat
tatagtcaagtgcagatgaaggtatttcgcatgcacgaaactgcaaagattcgtgaagct
cagcgcaatgaccattctagaagagacggctgggagagaagacctaaagagaaagattac
cgacatggattgggatcgccagatggggagcaatttggtgacattgatgaaaggtttcca
gctcctggagtggtcaagaaacccctgcttcctcttcctgatgtacctccagttgccctt
caggatggtcgtcatcctcgtcacatgggacaacgtatgcctggacctatgcaggggcaa
ggctacattcgccctcctcgttctatacttggcccaggccccagagggcctccaagggga
tcctggcgatattctagaggtggcgctggcttcaaagatagtactattgctcttccacca
gctgaccaattcattttagagagaatcgcccatgatcctatgaaaactattactattgat
agtagtccaagagaaattcgcttttatggagaaaatgcggtggcgatgatgagtgctgat
gacccacgtgaaatagcttttgatccgggtgatgcatctgttataattaatgatataagc
atttcttgttcatttaatgagcaagccaaggaagtaatcatcaatggaaaaacatatagt
gtgcatttgggagcaccaactagagaactttacatcaatgacgaaggttttgaatgccag
tttaattgtccgcccaaagaggtcctccttgctacaggggaagttcttgccattcagctc
cagtcaaatgatgctcccaaagtgcatgttggagctcaacgcagggatctagttgcagga
cgggttatgctcataattgatgctgaaacttatattcccatatttttagatgctaaacct
caaaggtttgacattgatggtgtgcctcacgtcatcaaatttgctgatgctttggacact
gtgctcgtcaacaaccatcccttcaatatcaagttcggtggtcccgccgtgcccatcact
gtcaacaacatgaggcactacatgaggctgactgagctgccccccgacgtggtgcccggg
gaggttgagatcgtgagcatgagcagccacttccgcaagaccacgcgcgtggccactgga
gcgggagcgcacgcggcagcgccctgggctggtcccggctccgcgcccagccttgctccc
acccctcatgccagtaatccggccagaatccctgaaaccgaccatgagcccgcactgcca
gtgcgcggaggcctagcagtgctaaaccgtggaggtatgcctaagaagataatgaaactc
aaaggccgccgagatcccaccgaaactttaaaaccagcaagaattgaagagaggcaaatg
cctgctgatttgtatcaagctctccagcctgccttgcgtggattcctaccgggttctaat
aatgctggctacaattccacctcacaagctatggcaggagcttatggcatgcggcaaaat
attggtgctggccctgaagcagctgctgaagtttccgcctcaaattcctctacatctact
gctacattcccctcaagtgatccagaagcaaccaccagttcaggttcaaatggaattcca
ttcatccaaacagatctaaatattcacaagttacttcaaagcctctatgacactgggctc
atagccaaaaaggatagtaatgctatcaaggaagagaaagatgttaagaaaatccatgaa
gttgacttcaaggactcaaagtctctgaaagttaaccagccagcaattattgacattttg
tactcgggaattcagtgtagttcttgtggaacacgtttccctccagaacaaacagagaag
tatagcgcccatttagattggcacttccgccagaatcgccgtgacaaggattctcaaaga
aagccacagagtagaaaatggtactatgatgtttcagactggattcagtttgaggaaatt
gatgatactcttgataaagcacaaaactggtttgacactcaacaaacagagactgccaag
tttgaagaagttgaggaggaggagattcaaagcgtgccatcaaaggatttccctgaaggc
acaatctgtgagctgtgccatgaccgctttgatcaattttacaatgaggataaggaagag
tggcacttgaaggactgcctggtcgcggatgggctcccctaccatcccttctgctataag
gattacagagtgtcagtggaatcaaaggatgaagagcaaacagagcctgttgaagaagct
gagtctaaagcagaagctgttgacaacccctctgaagaaacagagaagtctaaagagcca
aatgatgatgtcaagaaaatcaaggaagagaaatctgatgatgtggaaatggaggaacag
gcaagagaaatcaaacaagagcttgaaaagccttctgaagatgccgaatgtacaaatgct
gtagtaaagcaggaaattttagatgatgaacaaagcatcaaccctgaagaaggtctagat
gctaagcctgatgaaaagggtgagagctcaggagaagggaatgaactgaaagaagaagag
caagtagaagagacagaaaagcagagtcaggaaggagaagaggtggaaggggatgcagag
cagaaggactcgaaggactccaatgcggagacggaggcagagtcaggtgacgcagctggc
acagctgaatctgcagaagaaccgaaaaccctagaagagaaacttttgcacgatcctatt
actgacactacttctgctgtagtgtcttgctctattgatgggaatcttgaactagctcag
gctccacccactcttccagccattccaaaccgcatcaaaatcaatatatcaaaacccatt
gttaaacccactgaagaagccaaggatgagtcagatagggaggaagaaaatggtgacgca
gagtgtcaaggcagctcccagcaagatccctcggaggagaaaccagttgtttttaaacct
aagctcctaggacgcagactaaaagaactgccccctatgctgaaaggcagtgaaacatct
ggcttgtgttctctcatgtga
DBGET
integrated database retrieval system
