Frankliniella occidentalis (western flower thrips): 113211180
Help
Entry
113211180 CDS
T07591
Name
(RefSeq) uncharacterized protein LOC113211180 isoform X3
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113211180
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113211180
5.6.2.5 RNA 5'-3' helicase
113211180
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113211180
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
FHA
AAA_19
Yop-YscD_cpl
Viral_helicase1
AAA_30
UvrD-helicase
Helicase_RecD
AAA_16
AAA_22
DEAD
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
113211180
NCBI-ProteinID:
XP_026285273
UniProt:
A0A6J1SWH3
LinkDB
All DBs
Position
Unknown
AA seq
1869 aa
AA seq
DB search
MGWFLLRKPYPGLTEEQRIDIHSNELHVGRGRECSVHCLSMYVSRKHLTIIPKEGGNVCL
KDHGSSNGTFVNQTKITPGEEFPLKVGDEIGIGNINCDNKDCFVYEVRQEEDSTNGHIEN
VKGNSNSPGVRHSLDRGLKRFATEPEVVTLDDDDDDIFLDDCDSKKSKKPKIDHVQTSVP
DSKMDSSSASLSTVSMVQNESKACTIEKKSPGIINSICTKEESLTMKEASVDEKRNIEKK
SLDTINSICSMQESFTKKKVGADVKPNKSESSLGLNTSANAPQMTSADMKSHSFKIDEKS
MEPVNFSKGSLLKDSATSDKIKLSSPSSGEQMCPPPLPAASSNTIPGRFSLDKSITMPKN
PRLSCLMEDRSDMSAGTFRLSSPSLTERGSSSSACSTPNTSKQANHEDALPVQTSTPCVS
KIEKQTSTCTSQSEADWSPIVKDSSRHSQDSSANYTLDEQMIPVDSSDDEDEEIFPCSQL
FAEDDDVKPVIEDLREEADIVDLSMEDEPEENKISNNDELDEIVLSSDEDEDDIEDANRW
YMRLSQSLVKKEPLEDNLNVPEQSNILETDAREDNEKDKDPRHEDQLQDIWNIESEEDAE
MPQIKKKVTDFPGVCKIEESKEQKIAKSEIKVEHKPKEAKAEIKVEHKPKEKLKEKSKDE
HKDRESVKAREKEREKERVREKDRRRERERKSGKEKKSSKEKDMKDLEHRKKKEQHRTKS
TDTNTEKHRSHINSHSFKQELKNKNEFTQSAKLREMFPDSDSDESMDNYPESSHKDDSKS
PPPSEEIALGNISNEHPQPLVTLTRIEDDPKTCERFGLVSSDSPSGSPLQKKKSTRQIEL
VPALPMPPRRAINRGISSTTALKMFEGDKQKPLDSKVSKSVQPKDKKALRKERLAEVAAQ
NASKDKGNSESKRTAPAKIKVTSSNRGSFLVDNDECSPASRPKSRRDIRSIKIPKLKNKP
AIHLPTKSPLQDMNMSWDKSKPEECALPEPVEIPTGPQPKKRVAQVPPPGFYGDSSSKPI
ADLPPPPNKSCLSGSSKHNIALNEAKPIPVQKRVRFKENLVEYREIERLPNTRPVGSSMD
ADRPKPMSQVSLAAPPMPFKAPVMPSDEIVLQDVIYDISKWNPLWLKEEKNLPADVSPPV
VSNMDLPTIPKTEFLDFKEYHDTMYPLLMLELWNGVSKQYNSNESRKNMIMAVDSATSSA
VYHRPDRMLTTLHCHMIVDERGGTDHPRLGNLVVIDLCLKDPADKLVVIPVFGYVSFDSK
DRLRQSDQVHKDLVTHCHKPAYKIRFSVMIRERKNCTFNKGVMRVKNVKYIRGDLRVFQA
MKNLEYMPLQYSIISPSAANEDFTLPEINSNLAYPEQLNETQVKVVLKTAAVCQEVKPKI
CLIQGPPGTGKSHVIASLVMQLLYRDSIYSKANREKGLVPRVLVCAPSNNAVDLLVRRLL
RKRSKLDKSLRFKMVRVGQPQYMQQDVKGVSLQELAKADVEKQDKTATHNVDIESLKAKL
RSLEDVIENLRLKDKNIPQELTFRQADILRKLRVLEDRSKQQSHAAQNSSRQNFAVERAA
MTKILRGADIVATTLNSCMIKVMENVFPPVYDQGKYHFQVCIVDEATQCLEVETLIPLLL
GVKTLVLVGDPNQLPATILSKVAREKGLGTSLFARLQKIFPQAPQLLDTQYRMHPEILRW
PNKFFYNRRLKTPESLSFCRDSKVIPYAVLSLPFQQDRQGEVNVDEAKLVLQLAEVLINK
KVIATEFKVGIITPYQSQRRTISSMLQERAYRDLIEVNTIDSYQGQEKDVTIISCVRTNG
VGFLSDRQRINVALTRAKYAEFICGNFSSLDRDNMWNNLLTDARQRNCFHEVRGHCENEV
LWNYVRRKP
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgggttggtttcttttacgaaagccttatccgggtttaactgaagagcaaagaatagac
atacattcaaatgagttacatgttggtaggggaagagagtgctctgtgcactgtcttagc
atgtatgtgtctcgaaagcatttaacaataatccctaaagaaggtggaaatgtctgtcta
aaagatcatgggtcttctaatggaacatttgtgaatcaaacaaaaataactcctggtgag
gagtttcccctgaaggttggtgatgaaattggtattgggaatatcaattgtgacaacaaa
gactgctttgtgtatgaagtacggcaagaagaagatagcacaaatggacatatagaaaat
gttaaaggaaatagcaactctcctggagtaaggcattcattagatagaggactgaaacga
tttgctacggagcctgaagtagttactttggatgatgatgatgatgatatttttcttgat
gattgtgactctaaaaaatctaaaaaaccaaaaattgatcatgtgcaaacttcagttcct
gattcaaaaatggattctagttcagccagcctgtccacagtgtccatggttcagaatgag
tctaaagcttgcaccattgaaaagaaaagtcctggcatcattaattctatttgtactaag
gaagaaagcctcactatgaaggaagccagtgttgatgagaaacgcaacattgaaaagaaa
agtcttgacaccataaattctatctgttctatgcaagagagtttcactaaaaagaaagtt
ggtgctgacgtgaaacctaataaaagtgaaagttctttgggtttaaatacctcagccaat
gctcctcaaatgacatcagctgatatgaaatctcattctttcaaaattgatgaaaaatca
atggaacctgtgaatttttcaaaagggtctctgttgaaagacagtgcaacaagcgataag
ataaaattgtcttcaccatcgtctggggagcaaatgtgccctcctcctcttcccgcggct
tcttcaaatactataccagggcgttttagtttggacaaaagcataactatgcctaaaaat
cctcgtctttcatgtcttatggaagatcgatctgacatgtcagccggaactttcaggctc
tcttctccatcactgactgagaggggttcctcgtcatctgcctgctcaactcccaacact
tctaagcaagccaaccatgaagatgccttgccagtgcagacatctactccctgtgtttca
aaaattgagaagcaaacatctacttgtacatctcaaagtgaagctgattggtcacccatt
gtgaaggattcatcccgacatagtcaagattcatctgcaaattatactctagatgaacaa
atgatacctgtagattcaagtgatgatgaggatgaagagattttcccctgttctcagctg
tttgcggaagatgatgatgtgaaacctgtgatagaagatttacgggaagaagctgatatt
gtagacctctcaatggaggatgagccagaagaaaataagatttccaataacgatgaacta
gatgagatagtcttatctagtgacgaagatgaagatgatatagaagatgcaaacaggtgg
tacatgaggttatcgcagtccttagtgaaaaaggagcctttggaagacaatctaaatgtc
ccggagcaaagtaatattctggaaactgatgccagagaagataatgaaaaagataaggac
ccgagacatgaggaccagttacaagatatctggaatattgagtcggaggaggatgctgag
atgcctcagatcaaaaagaaagttactgattttcctggtgtctgtaagatagaggaatcg
aaagaacagaagatagcaaagtctgaaatcaaggttgaacataaacctaaagaagcaaag
gctgaaatcaaggttgaacataaacctaaagaaaagttaaaagagaaatctaaagatgag
cacaaggacagagaatctgtgaaagctagagaaaaagagagggaaaaagaaagggttaga
gaaaaagatagaagaagagaaagagagagaaagagtggaaaagagaagaagtcctccaaa
gagaaagatatgaaagaccttgaacataggaaaaaaaaggagcagcatagaacaaaaagt
acggacaccaacactgaaaaacacaggtctcatattaatagccattcttttaaacaagaa
ctcaaaaataaaaacgagtttacacaaagtgcgaaattgagagaaatgtttccagacagt
gattcagatgaaagtatggataattatccagaaagttcccataaggatgattcaaaatct
ccacctccttcagaggagatagcccttggtaatataagtaacgaacatcctcagccacta
gtgactctcacaagaatagaggatgatcccaaaacatgtgagcgctttggtcttgtctct
tcggatagtcccagtggttctcctcttcaaaaaaagaagagcaccagacaaattgagtta
gtacctgctttaccaatgcccccccgaagagcaatcaatcgtggaataagcagtaccaca
gcacttaaaatgttcgaaggtgataaacaaaaacctctagattctaaagtaagtaaatca
gtacagcctaaagacaagaaggctttaaggaaagaaaggcttgcagaagttgctgctcaa
aatgcatctaaagacaaagggaactcagaatcaaaaagaactgcaccagccaaaattaag
gtcacttcatccaacagagggtctttcttagttgacaatgatgagtgttctcctgcaagc
agaccaaaaagtcgtcgtgatatacgaagtatcaagattcctaaactaaagaataaacca
gcaatccatctccctaccaagtctccattacaagatatgaatatgtcttgggataagagc
aagccagaggagtgtgcacttcctgaacctgttgaaattcctactggccctcaacccaaa
aagcgagtagctcaagttccccctcctggattttatggtgattcatcttcaaagccgata
gcagatctccctccgcctccaaacaaatcttgcttgtctggatcgtcaaagcataatatt
gctttaaatgaagcaaaaccaatccctgttcagaaaagggttagattcaaagaaaatctt
gttgagtatcgagaaattgagagactgccaaatacaagaccagtcgggtcttccatggat
gctgatagaccaaagcccatgagtcaggtttctttggctgctccccccatgcccttcaag
gcaccagttatgccctctgatgaaatagtcttgcaagatgtcatctatgatatttccaaa
tggaatcctctgtggcttaaggaagaaaaaaatttgcctgctgatgtatctcccccagta
gtatcaaatatggatttgccaacaatacctaaaacagaatttttagattttaaagagtat
catgacacaatgtatccacttcttatgttggagttgtggaatggcgtttctaaacagtac
aattctaatgaatcaaggaaaaacatgataatggcagttgatagtgctacctcatctgct
gtttatcataggccagacagaatgttaacaaccctgcactgtcatatgattgtggatgaa
agaggtggaacagaccatcccagacttggaaatttggtggtcattgatctttgtttaaag
gatcctgcagacaagttagttgttatccctgtatttgggtatgtgtcatttgactccaaa
gatcgtcttcgacagtctgatcaagttcacaaagatctagtaacgcattgccataaacca
gcatataaaatacgcttttcagttatgattagagagcgcaaaaattgcacattcaataaa
ggggttatgcgtgttaaaaatgttaaatatattcggggtgacctacgggtctttcaagca
atgaaaaatcttgaatatatgccattacagtacagcattatttcgccctcggcagcaaat
gaagatttcactcttccagaaataaacagcaatctagcatatcctgagcaattaaacgag
acccaagtaaaagttgtcttgaaaacagctgcagtttgtcaagaagttaaacccaaaata
tgcctcatacaaggtccaccaggaactggtaaatcgcatgttatagctagccttgtgatg
cagttattgtatagagatagcatctactctaaagcaaacagagaaaaaggcttggtcccc
agagttttggtttgtgcaccctctaacaatgcagttgacctgttagttcgaaggttgcta
cgaaagagatcaaaactagataaaagcctccgctttaagatggtgcgtgttggccaacct
caatacatgcaacaagatgtaaaaggtgtgtcccttcaagaacttgccaaggctgacgta
gagaaacaagataaaactgccacacataacgttgatattgaaagcttgaaagcaaagctc
cgaagccttgaagatgttatagaaaacttaaggctgaaagacaaaaatatacctcaagaa
ttgacattccgtcaagctgacattcttcgaaaactgagagttcttgaagacagaagcaaa
cagcaaagtcatgctgcccaaaactcttccagacaaaattttgcagttgagcgtgcagcc
atgacgaaaatcctgagaggtgctgacattgttgccacaactctcaattcatgtatgatt
aaagttatggagaatgtttttccaccagtatatgatcagggaaaataccacttccaggtg
tgtatagtagatgaagctacacagtgcttagaagttgaaacccttattccactgttgcta
ggggtgaaaactttggtcttagttggagatcctaatcaacttccagcaacaatattgtca
aaggttgctcgagagaaaggattgggaacatctttatttgcaagactacagaaaatcttt
ccacaagcccctcaacttctcgacacacagtatcgtatgcatcctgaaattttgagatgg
cccaacaaatttttctacaacagacgattaaaaacacctgagagtctgtcattttgccgg
gactctaaagttatcccatatgctgttctaagtcttccatttcaacaagatagacaaggg
gaggttaatgttgatgaagctaaattggttctacaattagctgaagtattgataaataaa
aaagttattgctacagagtttaaggtgggtataatcacaccttaccaaagtcaaaggagg
acaatcagttctatgctccaagagagagcataccgtgacttgattgaagtaaatacaatt
gacagctaccaaggccaagaaaaagatgtcactataatttcttgtgtccggacaaacggt
gttggattcctttcggatcgccagagaattaatgtggcgttgacacgcgctaaatatgcc
gagttcatttgtggcaatttttcatcattagacagggataatatgtggaataatttatta
acagatgctaggcaacgaaattgcttccacgaagtaagaggccactgtgaaaatgaagtg
ctatggaattatgttcgtcgaaaaccttaa
DBGET
integrated database retrieval system
