Frankliniella occidentalis (western flower thrips): 113211888
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Entry
113211888 CDS
T07591
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113211888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
foc03041
]
113211888
03009 Ribosome biogenesis [BR:
foc03009
]
113211888
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113211888
Spliceosome [BR:
foc03041
]
Complex A
U2 snRNP components
U2 related factors
113211888
Complex B
113211888
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113211888
Ribosome biogenesis [BR:
foc03009
]
Eukaryotic type
90S particles
Helicases
113211888
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
nSTAND3
Flavi_DEAD
AAA_22
SRP54
AAA_25
ResIII
ABC_tran
ATPase
AAA_30
TsaE
AAA_7
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
113211888
NCBI-ProteinID:
XP_026286198
UniProt:
A0A6J1SY77
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MSKRRIEVIDPYFTKKSKAGAAGAPAIPAIAAAPSGTGLLPRTPGINPFSGLPYTQRYHE
LHRKRIQLPVFEYREEFMNLLANHQCIVLVGETGSGKTTQIPQWCVEYAMTLGKKGVACT
QPRRVAAMSVAQRVSEEMDCALGQEVGYSIRFEDCSSAKTVLKYMTDGMLLREGMSDPML
ENYQVILLDEAHERTLATDILMGVLKEVTKQRSDLKLVIMSATLDAGKFQSYFDNAPLMN
VPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEIAGDVLLFLTGQEEIEEACKRIKR
DMDNLGPEVGELKCIPLYSTLPPNLQQRIFEAAPPPKSNGAVGRKVVVSTNIAETSLTID
GVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYK
TEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLEALDD
DGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAAD
DAKMRFAHIDGDHLTLLNVYHAFKQNQEDPNWCYDNFVNYRSLKSGDNVRQQLSRIMDRF
SLKRTSTEFTSKDYYINIRKALVTGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCLDHKP
DWVIYNEFVLTTKNYIRTVTDIKPEWLLRIAQQYYDLNNFPQCEAKRQLELLQTKLDSRQ
YQEGF
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggcgtatagaagtcatcgacccctatttcaccaaaaagtcaaaagctggt
gctgcaggtgctccagctattcctgcaattgctgcagctccatcgggaacaggactccta
ccgaggactccgggcatcaatccattttctggcttgccatacacccaaagatatcatgag
ttgcatcggaaacggattcagctgccagtttttgaatacagggaggaatttatgaattta
ctggccaaccaccagtgtatagtgcttgttggagaaaccggttctggtaaaactacacaa
attccacaatggtgtgtggagtatgctatgactttggggaaaaagggtgttgcctgcacc
cagccccgtcgagtagctgcaatgtctgtcgctcagagggtgtcagaagaaatggattgc
gcattgggtcaggaagttggatattctatccgttttgaggactgctccagtgctaagaca
gttcttaaatacatgactgacggtatgttacttcgagaaggcatgtcagatccaatgctg
gagaactaccaagtaatattgttggatgaagcccacgaaagaacccttgcaactgatatt
ctcatgggtgttttaaaggaagtgacaaagcagaggtcagacttaaaattagttatcatg
tcagcaacacttgatgcaggaaaattccagtcctactttgacaatgctcctctcatgaat
gtacctggaagaacacatcctgttgaaatcttttatactccggaacctgaacgtgactat
ttagaggcagctatcagaacagttattcaaattcacatgtgtgaggaaattgctggggat
gttcttcttttcctaacaggacaagaggaaattgaggaagcctgcaaacgtattaagagg
gatatggacaatttaggaccagaagttggagaactgaaatgcatccctttatattctaca
ctgcctcctaatttacaacagcgcatttttgaggctgcaccacctcccaaatcgaatggt
gcagtgggacgaaaagtggtagtctcaaccaatattgcagaaacatctttaacaatcgat
ggagtagtttttgtaatagatcctggatttgccaagcaaaaagtttacaatcctcgcatt
agagtggaatcattgcttgtatctcctatcagcaaagcatcagcccaacagagagctggg
cgagctgggcgaacacggcccggcaaatgcttcagactgtatactgaaaaggcctataaa
acagaaatgcaggacaatacctaccctgaaattttacgatcaaatctgggctctgttgtc
ttacaactcaaaaaacttggcattgatgatttagttcattttgacttcatggatcctcca
gctcctgagactttgatgagagcacttgagctcttgaactacttagaagctctagatgat
gatggaaatttaactgatctcggagctgttatggctgaattccctttggatcctcagctt
gccaaaatgctgattgcatcatgcaatcacaactgctctaatgagatactgtccattaca
gccatgttgtcggtccctcagtgtttcgtccgaccaaatgaagccaagaaagcagcagat
gacgccaagatgagattcgctcacattgatggagaccacctgacccttctcaacgtatat
catgcatttaagcaaaatcaagaagacccaaactggtgctatgacaattttgtcaactat
cgatctttgaagtctggtgataatgtgcggcaacagctttcaaggataatggatagattc
agcctgaagcgaacctccacagaattcacctctaaggattactacattaacattcgtaaa
gctcttgtcactggatttttcatgcaggttgcccatttagaaagaacaggccactatttg
acaatcaaagataatcaagttgttcaactacatccttcaacctgcctggaccacaagcca
gactgggtcatctataatgaattcgtgttaacaacgaaaaactacattcgtactgtcaca
gatataaagcctgaatggcttctaagaatagctcaacagtattacgatctgaacaacttc
cctcagtgtgaagctaaacgccaacttgaactccttcaaacaaaattggactccagacag
taccaggaagggttctag
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integrated database retrieval system
