Frankliniella occidentalis (western flower thrips): 113211912
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Entry
113211912 CDS
T07591
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113211912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113211912
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113211912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
113211912
NCBI-ProteinID:
XP_026286230
UniProt:
A0A6J1T3P0
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MLTTKTFLKKTKRGNILKIVREHYLRDDIWCGSVLCKTCSMKEREKTLEKDLDHSSSLFS
FPHYLVLDTNIVLDQIDVLEENSFENVIILQTVLEEVKHRSSPVYRRLKDIISNPDRKFY
VFVNEHHKDTYVERKAGESVNDRNDRAIRVATAWYASHLAPSQPKGKNKHVSIVLLTDDA
ANRQKAKDEGLISCSVHDYVSSLENAPALLDKLSKRNFVLEGNSKEPLFPLHLSPKEIQD
GIKAGKLLQGTFLASRENFLEGSVNVEGYEKFILVQGHAGLNRAVDGDTVALELLPESEW
VAPSDIVLEDAEEDPGDILDDEAKMEKEKQKAKKVEREPTGKVVGIIRRKWRQYCGILQP
SQDKNSIRHLFMPAERKISKIRIETRQAETLKSQRIIVAIDSWPRTSRYPLGHFVRALGN
IGDKNTENEVLLLEHDVPHSKFSEQVLSFLPKLPWVITDADLERRVDLRNITICSVDPPG
CTDIDDALHCRELENGNYEVGVHIADVSHFIRPGNALDKEAALRATTVYLVDKRIDMVPE
LLSSNLCSLRGNEERFAFSCIWELTKDATIVNTKFHKSVICSKAALTYGEAQARIDDKTL
NDDVVKSLRGLNSLAKILKKRRIENGALVLASPEIRFQVDSETHDPIEVVAKKMLETNSM
VEEFMLLANISVAQKIVEEFPECAMLRRHPQPPPTNFEPLVKAGHLQGFEINVESGKDLA
ESLDKAVKSDNPYFNTMLRIMATRCMMQAVYFASGMLQKDEFFHYGLACPIYTHFTSPIR
RYADIIVHRLLAACIGADSTYPELLDKRKSHSLCHNLNYRNRMAQYAGRASVNLHTHLFF
RNRVQDEQGYVLYVRKNALQILIPKYGLEGTLYLAPPKGQIAKVNFTYNEEEQSQSHGSI
KFRVFDPVTVQLSLDRRNVQHEKLMLLLVKPEIPEFSVPSQAGSQQVEAMDVDEVKDVAP
PPKRQKKSK
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccacaaaaacttttttaaagaagacaaaacggggaaatattttgaagattgtt
cgagaacactacctccgtgatgacatatggtgtggctcagttctgtgcaagacatgttct
atgaaagaaagagaaaagactcttgaaaaggatctagatcatagttccagtctcttctca
ttccctcactacttggtgctggacaccaatattgtattggatcagattgatgtactggaa
gaaaacagttttgaaaatgtaattattttacaaacagttctagaagaagtaaaacatcgt
agttctccagtttatcggcgtttaaaagatatcatctctaatcctgatagaaaattttat
gtctttgtaaatgagcatcacaaagatacttatgttgagcgtaaagctggagaatctgtc
aatgacagaaatgacagagcaattcgagttgcaactgcatggtatgcctcacaccttgca
cctagtcagccaaagggaaagaataagcatgtgagcattgttcttcttactgatgatgct
gcaaaccgtcaaaaagccaaggacgaaggactcatctcttgctctgtgcatgactatgta
agctctttggagaatgcccctgccttactcgacaagttgtcaaagagaaattttgttttg
gaaggcaattcaaaagaacccttatttccacttcatctatctcctaaagaaatccaagat
ggtataaaagctggtaaacttctacaaggcacattccttgcctcccgagaaaatttcctc
gaaggatcagtgaatgtggaaggttatgaaaagtttattctggtccaaggacatgctggc
ttgaacagggcggtagatggtgacacagtagccttagaactcttgccagaaagtgaatgg
gttgccccgagtgatattgtgttggaagatgctgaagaagatccaggagacatattggat
gatgaagcaaaaatggagaaagaaaaacagaaggctaagaaggtggaaagagaacctaca
ggcaaggttgtgggaatcatcaggcggaaatggaggcagtactgtgggatcctgcaaccg
agtcaagacaaaaatagtattcgacatttattcatgcctgcagagcgcaaaatttccaag
attcgtattgaaacaagacaggctgaaactttaaagtcccagcgcatcatagtagctatt
gactcctggccaaggacgtcaagataccccttgggccactttgtccgggctctcgggaat
attggcgacaagaatacagaaaatgaagtcctcttgctggaacatgatgtgccccacagt
aaattctcagaacaagttctcagctttcttccaaaattgccgtgggtgattacagatgcg
gacctggagaggcgcgtggatctgcggaacatcaccatatgttcggtagacccccccggc
tgcaccgacatcgacgacgccttgcactgcagggaactcgagaacggcaactatgaggtg
ggtgttcacatcgctgatgtctcacatttcatccgacctggtaatgctttggacaaggag
gctgctctacgagccacaacagtttacttggtagacaaaagaattgacatggtccctgaa
ctactgagttccaatttgtgctcattgaggggcaatgaagaacggtttgcattctcctgc
atttgggagttgacaaaggatgccacaatagtcaataccaaatttcacaaaagtgtaatt
tgttcaaaagcagctttgacttacggcgaagcccaagctaggattgatgataagacacta
aatgatgatgttgttaaatcgctaaggggattgaattccttagctaagattcttaaaaag
agaagaatagaaaatggtgctcttgttttagcctcacctgagattcgattccaagttgat
agtgaaacacatgatcccatagaggtagtagcaaagaagatgcttgaaacaaattcaatg
gtcgaggagttcatgttgttagccaatatttcagttgctcaaaaaattgttgaagaattc
cctgagtgtgcaatgcttaggagacatccacagcctcctcctaccaactttgaacctctt
gtgaaagcgggtcacctgcaaggttttgagattaatgtggaatctggaaaggatctggcg
gaatccttggacaaagctgtgaagtctgacaatccctacttcaataccatgttgcgaatc
atggcaacacgttgtatgatgcaagctgtgtattttgctagtggaatgctacagaaggat
gaatttttccattatggcctggcttgtcctatttacactcatttcacctcacctattaga
cggtatgcggacattattgtgcatcgacttttggctgcctgtattggagctgactcaaca
tatcctgaactgctagataagcgtaaaagtcattccctgtgtcataatttgaattaccga
aacagaatggctcagtatgcaggtcgggcttcagtaaacctccatactcatctattcttt
cgaaacagagttcaagatgaacaaggatatgttttatatgttcgtaaaaatgcacttcaa
atccttattcctaaatatggtcttgaaggtactctttatcttgcaccacctaagggacag
attgccaaagttaatttcacatataatgaagaggaacaaagtcagagtcacggatcaatt
aaattcagagtgtttgatccagtcacagttcagctaagcttagaccgcagaaatgtgcaa
catgaaaagctcatgctcctgcttgtaaaacctgagattccagagtttagtgtcccatct
caagcagggtcacaacaagttgaagcaatggatgtagatgaggtaaaggacgtagctcca
cctcctaagagacaaaagaaatctaagtaa
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