Frankliniella occidentalis (western flower thrips): 113212422
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Entry
113212422 CDS
T07591
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113212422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113212422
Enzymes [BR:
foc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113212422
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113212422
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
113212422
NCBI-ProteinID:
XP_026286890
UniProt:
A0A6J1T5I5
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MTEVLRDTFEKNFPRVEKDIKNAAFIAIDTEFSCLVSHTESKSSLFDTAEQRYLKQRDNI
SDALLLQFGLTAFIFDREKNVYESHSYCFYLFPHTFGSNDQRFKCQASSLEFLCHHKFDF
NKFVYNGISFLNDEQDIRAQQELKDGDLLRSVERALSHEDEESVQAMCSQVALWLAGGLP
EAATEKSIFLEVPRSSQSSQCIAYVAHHELRKRFICIWTLPEDGNIRVLKVSPTERAMME
KNHSHEDELQNAVLLSIRGFTRIFKLLVQLKKPIIAHNCVLDLMIMHKQFYCSLPKSYQA
FKNNIHSLFPNVYDTKYMSSEYRKKIDRSDSWSNNTLPGLYRYFDLGRGHSIASYSPKII
SQDFGDEGERKFHDAGWDSYCAGFCFIRMAHFFGVMEMGGLSAARPFTSTEHLALTSHLA
NRINIIRGNLTHIVLDGLDPPSHRPEIIVVKRRDGKALDALELTESLSKHGSVDVKMVSN
KLALVAASTKGQVMDLCREYYKHPELALVKYNKIQHDPFIWTSTLCSLVMCAALSGIFIY
RVLKN
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggttttgcgtgacacatttgaaaagaattttcctagggttgagaaagatatt
aaaaatgctgcatttatagcaattgacacagagttcagttgcctagtttctcacactgaa
tccaaatccagcctttttgacacggccgaacaacgttatttaaagcaaagagataatatt
tcagatgctttgctgttgcaattcggtctcactgcctttatttttgaccgagagaaaaat
gtttatgaaagccattcctactgtttttatctattccctcacacatttggctccaacgat
cagcgttttaaatgccaagcatcttctctggaatttctttgtcaccataaatttgatttt
aacaagtttgtgtacaatggaatttcatttttgaatgatgaacaagatatccgtgcccag
caagagttgaaagatggagatctcttacgatcagttgaacgagctttatctcatgaagac
gaagaatctgttcaagcaatgtgctctcaggttgctctttggttggctggaggtttacct
gaagcagccactgaaaagtcaatattccttgaagtccctaggagctcacaaagctcacaa
tgcattgcttatgttgctcatcatgaattgcgcaagcggtttatctgcatatggacatta
ccagaagatggaaatataagagttctcaaagtatctccaacagaaagagcaatgatggaa
aaaaatcattctcatgaagatgaattgcaaaatgctgtccttctttcaattagagggttc
acacgaatttttaagcttttagttcagttgaagaagccaataattgcacacaattgtgtt
ctagatctcatgataatgcacaagcagttctattgttcccttccaaaatcgtaccaggca
ttcaagaataacatacattcactctttccaaatgtgtatgacacaaaatatatgagctct
gagtaccggaagaaaattgacagaagtgactcgtggagcaacaatacgttacctggtctt
tatagatactttgatttaggaagaggtcatagtattgcttcatacagtcctaaaataata
tcacaggactttggtgatgagggtgagcgaaaatttcatgatgctggctgggactcatat
tgtgccggtttctgttttattcggatggctcactttttcggggtcatggaaatgggaggg
ctcagtgcagccaggccttttaccagcacagaacatcttgctcttacttctcatcttgcc
aaccgtatcaatattattcgtggcaatctcacccatattgtacttgatggtttggaccca
ccttctcacagacctgaaataattgttgtaaaaagaagagatggtaaggcccttgatgca
ttagaactaactgaaagtctatcaaagcatggttctgttgatgtgaagatggtatcaaac
aaactagcattagttgctgcaagcaccaaaggacaggtgatggacttatgccgagagtac
tacaagcatcctgaattagccctagtaaaatacaataaaattcaacacgatccattcatt
tggacttcaacattatgcagccttgtgatgtgtgctgccttgtcaggaatcttcatttat
cgtgtactcaagaactag
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