Frankliniella occidentalis (western flower thrips): 113212815
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Entry
113212815 CDS
T07591
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
foc03041
]
113212815
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113212815
Spliceosome [BR:
foc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113212815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
DEAD
Helicase_C
R3H
Ank_2
Ank
ATPase
HA2_N
AAA_19
nSTAND3
Ank_5
Ank_3
ResIII
AAA_22
Ank_4
Sigma54_activat
FtsK_SpoIIIE
AAA_7
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
113212815
NCBI-ProteinID:
XP_026287428
UniProt:
A0A6J1T2E7
LinkDB
All DBs
Position
Unknown
AA seq
1419 aa
AA seq
DB search
MPRKKPTNRRGQKAGNIGEEVRIAVKLQLKKFLEDPSATECEFPSSLFAEERAYIHNMAK
EYGLRSKSRGKNGVNRAVTVYKREGSSIVQADPAFDLCPNSRLLIKTLLVECPLNAKERQ
DLMPQLERDRERAILNAEVKEIGRAMGRLSSGVPQVPSANYNPELLPFRKSLPIWEMQDN
IVRTISNNQTVLIAGETGSGKTTQVPQFILEHCQNYRKPCRIVCTEPRRISAVSVSERVS
YERNEILGQSVGYQIRLESRVSPKTVLTYCTNGVLLRTLMGGDAILSTLTHIIVDEVHER
DRFSDFLLITLKDALLKYKNLRLILMSATMDISVFTKYFGDCPVITVPGRQFEVQEYFLE
DVLKITGYLNSDIPQLKKELGQNNIQRTEFENWTRAASSNQEIKEDYDSKPDLSLESSTS
EEQKEALDPWMIEQMDNCIDEVWKNGAEESFPQILYFIQTENVPVDYQHSTHLATPLMVA
AGRGEMDMTTHLLKLKASTSIKSGNGWTALDWAMNNGHHQIAQLLKDSSSVNETMPEMPL
DVFNAKSQELAIRDHQLLEMYHHSFNDDEIDIKLCLALIYHLHCRSDKGAILVFLPGYDV
ITTLRDRINDERDKFSQASKFSLYTLHSNMQTSDQKRVFLPAPANTRKIILSTNIAETSV
TIDDVVYVIDSGKVKEKSFDAISGVSSLRNEWISQACAKQRKGRAGRTRPGLCYHMFSKI
RYRSLQHHQTPEILRLPLQELCLHTKLLAPPNTAIADFLAKAMEPPPFLVTRNAVHLLKT
IDALDPWEDLTELGHHLLDLPIEPRLGKMLLNAILLKCLDPVLTIVCTLAYKDPFVLPTN
PSLRSAARLSRRHFSAGTFSDHMAMLRAFQAWQSSRSSGREVSFCQKNYISSATMEQVMS
LRAQLLGQLRASGFVRAKGGGDIRDLNTNAENWAVVKAALTAGFYPNIARVDREAMQLRT
MKEALVVVHPSSTLRDLDPREGKVSEKLPTDWIVYEEMNRTGKLCQIRMCTIISPITIAL
FAGPLRLPSDALSSSELEGSINQYQSDSEWEEHNDYDSMLKLDEWINFCVDSEAAHLAFQ
LRQKWSATFLRRMRNPSKNWNPADDAVIQAVVQILSSEEKKIGLQQPDGIGQRPRPVNID
FQSSVGGRRQDTNDTDSVSSENSNHSQRFFQNSRRMNRKYGSESGHSSSSADDSMIQQDF
SFPEVESSKKGARYFIIKAGNPRAINASLRENVWAFTATTENKLITVFREGFAVMLIFSI
HGSGNFQGVASLVSDVSDVRDSGKVHVQDMAGPNLCSPLPIKWLKYGDIPFHATRNIMNP
YNENRNIQTSRDGQEVEPHVASQLCKLWEKLSHTKPAHRFSQLQGNVSNPTSSNSQSPSK
SGRPVRGNPQNSFLNSPIGSGRQFGRSGNFGSNYHNTSQ
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgccacgaaagaagccaaccaatcggagaggtcagaaggccggcaacattggtgaagag
gttcgcattgctgtaaagctgcagctaaaaaagtttcttgaggatccttctgcaactgag
tgtgaatttccctcatctctctttgctgaggaaagagcatacattcataatatggccaag
gaatatgggttgcggtccaaaagcagaggcaaaaatggagttaatagagctgtaacagta
tataagagggaaggttcaagcattgttcaagctgatcctgcttttgatctctgccctaac
tctcgcttacttattaaaacattacttgtggagtgtccactcaatgccaaagagcgacaa
gacttaatgcctcaacttgaacgtgacagagagcgagcaattttgaatgcagaagtgaaa
gagataggacgagctatgggccgattgagtagtggtgtaccccaagtcccttcagctaac
tacaatcctgaattactcccatttagaaaaagtcttcccatttgggaaatgcaggacaat
atagttcgcaccatttcaaacaaccaaacagttctcattgctggcgaaacaggatcaggg
aagacaactcaagttccacagtttatcttggaacattgtcaaaactataggaaaccctgc
cgtattgtgtgtacagagcctagacgtatttcagctgtatctgtgagtgaaagagtttct
tatgaaagaaatgaaatattagggcaatcagttggctatcagatacgtcttgaaagcaga
gtctcaccaaaaacagtattaacatattgcaccaatggagtgttattaagaacattaatg
ggtggtgatgctatactttccactctcactcacattattgtggatgaagttcatgagcgt
gatcgtttttctgacttccttctaattacccttaaagatgctcttttgaaatacaaaaat
ttacgactcatcctaatgtctgcaacgatggacataagtgtattcaccaaatattttggt
gattgccctgtgattacagttcctggacgtcaatttgaggtacaggaatattttttggag
gatgttttgaaaataactggctatttaaatagtgacattcctcaattaaagaaagagcta
ggtcaaaacaacattcaaagaacagaatttgaaaactggactcgtgctgctagcagcaac
caagaaattaaagaggactatgattcaaagcctgatctttctctggagtcctcaacttcc
gaggagcaaaaagaggcattagatccttggatgatagagcaaatggataattgcatcgat
gaagtatggaaaaatggtgcggaagaatcgtttccccaaattctttatttcattcaaaca
gaaaatgttcctgttgactatcagcactcaacacatttggcaactcctcttatggtagct
gctggtcgaggtgaaatggacatgaccacacatttactaaaacttaaagcaagcacaagt
ataaagtcaggcaatggttggaccgcccttgactgggccatgaataacggtcaccatcaa
atagcacaacttcttaaagactccagtagtgtaaatgaaaccatgcccgaaatgccactg
gatgtgtttaatgcaaaatctcaagaacttgctattagagatcatcagttacttgaaatg
tatcatcacagcttcaacgatgatgagatagatattaagctgtgccttgctctgatctac
cacttgcattgtcggtctgataaaggagctatcttggtatttttaccgggctatgatgtc
atcacaacattgcgagatcgaatcaatgatgaaagagacaaattttctcaggcgagcaag
ttttctttgtacacacttcactcaaatatgcagactagtgatcaaaagagagtattccta
cctgctccagccaatacaagaaaaattatactgtccacaaatattgctgaaaccagtgtt
acaattgatgatgtagtttatgtgatagactcgggaaaagtgaaagagaaatcgtttgat
gccatctcaggtgttagttctttaagaaatgaatggatatcacaggcatgtgctaaacag
cgcaaagggcgtgctggaagaactcgtcctgggctttgctatcacatgttttccaaaata
cggtaccgatccctacaacatcatcaaactcctgaaattctgagactaccgttacaggaa
ctatgcctacacacaaaacttttagctccaccaaatacagcaattgcagattttcttgcc
aaagccatggaaccaccaccatttctagtgaccagaaatgctgttcatctgttaaagact
attgatgcccttgatccatgggaagatttaactgaattgggacatcatcttctggatttg
cccatcgaacctcgtcttggaaagatgttgttaaatgcaattctattgaagtgtttagat
ccagttctaacaattgtctgtaccttagcttacaaggatccatttgttcttccaaccaac
ccaagtctcagaagtgctgcccggttgtctcgtagacatttttctgctggaacattcagt
gatcacatggctatgttaagagccttccaggcatggcagtcatcccgttccagtggccgc
gaagtatcattttgtcagaaaaattatatctcgtcagctacaatggagcaagtaatgagc
ttgagggctcagttgcttggtcaattacgtgcttctggttttgttagagccaaaggaggg
ggtgatatcagggatttgaacaccaatgccgaaaactgggctgttgtgaaagctgctctc
acagctggtttctatccaaatatagctcgcgttgacagagaggctatgcaattgcgaact
atgaaagaagcccttgtggtagtacatccatcctctacattacgagatttagatccaaga
gagggaaaagtctctgaaaaacttcctacagactggattgtgtatgaagaaatgaatcga
actgggaagttgtgtcagatccgtatgtgtaccattatttctccaatcacaattgctctc
ttcgctggacctttgcgacttccatcagatgccttatcatccagtgagttggaaggaagc
attaatcaatatcaaagtgattcagaatgggaggaacacaatgactatgatagcatgtta
aaacttgatgaatggattaatttctgtgttgactcggaagctgcccatcttgctttccaa
ttgcgtcaaaagtggagtgcaactttccttcgtcgaatgcgaaatccttcaaaaaactgg
aatcctgcagatgatgctgtaattcaagctgttgttcaaattctctcatctgaggaaaag
aaaataggcctacagcaacctgatggcataggacaacgcccaagacctgttaacattgac
tttcagtcttctgtaggtggaaggcggcaagacacaaatgatactgactctgtttcatct
gaaaattcaaatcacagtcagcgcttttttcaaaattccagacgaatgaataggaaatat
ggttcagaaagtggtcatagttctagttcggcagatgattcaatgatacagcaagacttt
tcctttccggaggtggaatcctctaaaaaaggggctcggtactttattatcaaagcaggt
aatcccagagccattaatgcctctttaagagaaaatgtgtgggcttttacagcgaccact
gaaaataaattgataacagtgtttcgggagggatttgcagttatgttaattttcagcatt
catggaagtggaaatttccaaggagttgcaagcctggttagtgatgttagtgatgtaaga
gatagtggtaaagttcatgtgcaagatatggcaggccccaatctttgttcacctttacca
ataaagtggctgaagtatggtgatattcctttccatgccacacggaatattatgaatcct
tacaatgagaaccgcaatattcaaacaagccgtgatggccaggaagtagaaccacatgtt
gcatctcaactttgcaaattatgggagaaactttctcataccaagcctgctcaccgtttc
tctcaactgcagggaaatgtgtcaaaccctacgtcttcaaattcccaatctccttctaaa
agtggaagacctgttaggggtaatcctcaaaatagttttttgaattctcctattgggtct
ggacgtcagtttggaagatctggtaactttggtagcaactaccacaatacctctcaatag
DBGET
integrated database retrieval system
