Frankliniella occidentalis (western flower thrips): 113213111
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Entry
113213111 CDS
T07591
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
foc03016
]
113213111
Enzymes [BR:
foc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
113213111
Transfer RNA biogenesis [BR:
foc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113213111
Prokaryotic type
tRNA splicing ligases
113213111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
113213111
NCBI-ProteinID:
XP_026287847
UniProt:
A0A6J1T4H7
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVREYNDELKYLERIDANSWRIKKGFQPNMNVEGVFYVNSALEKLMFDELRNSCRPGMV
GGFLPGVKQIANVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPLSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSMFDHIPVGVGSKGIIPMTATNLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEDKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFHMTPDDLDMHVIYDVSHNIAKVE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QQTFGSTCHGAGRALSRAKSRRNLDYTEVLSKLQQQGIAIRVASLKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgagagagtacaatgatgaactcaagtaccttgagagaattgacgcaaactca
tggagaatcaaaaagggttttcaaccgaatatgaatgtagagggagtattttacgtaaat
tctgcattggaaaagctgatgtttgatgaactacgtaactcttgcagaccaggcatggtt
ggtggctttttgccaggagtgaaacagattgctaatgttgctgcactccctggcattgta
catcgctctattggtttacctgatgttcactcaggatatgggtttgctattggtaatatg
gcagcattcgatatgaatgatccattgtctattgtttcgcctggtggggttggctttgac
attaactgtggagtacgcctcttaaggacgaatctgtttgagaaagatgttcagcctgtg
aaagagcaacttgctcagagtatgtttgatcatattcctgttggagtcggctcgaaggga
atcatcccaatgactgcaacaaaccttgaagaagcacttgaaatgggaatggactggtct
ctccgagaaggatacatatgggcggaggacaaagaacactgtgaagaatatgggagaatg
ctcaacgctgatccttctaaagtcagtatgcgggccaaaaagaggggtttaccacagctt
ggtactctaggtgctggtaatcattatgctgaaattcaagttgtggatgaaatttatgac
aagtgggcagcaagtaagatgggcattgaggataaagggcaggtgtgtgtaatgatccat
tcaggtagcagagggtttggccatcaagtagctacagatgctttagttcaaatggaaaaa
gctatgaaaagagacaatattgaaacaaatgaccgacagttagcttgtgcccgcatcaat
tctcaggagggccaagactaccttaaagccatggcagcagctgcaaattttgcgtgggtt
aatagaagctcaatgacttttttgtcgagacaggcttttgcgaagcaattccacatgact
cctgacgacttggatatgcatgttatttatgatgtttctcacaatatagcaaaagtagaa
gaacacatggtagatggcaagcaaaagacattgttggttcatagaaagggatccactaga
gcatttcctcctcaccatcctttgatacctgttgattatcaattaactggccaacctgtt
ttaattggtggaacaatgggtacttgcagttatgtccttaccggaacagaacagggaatg
caacaaacctttggatcaacctgtcatggagcgggccgggctttgtcaagagccaaatct
agacgtaatttggactacacagaggtcttaagtaaattgcaacaacaaggcattgctatc
agagttgcatcattaaagttagttatggaggaagccccagagtcatacaaaaatgtaaca
gatgtggtcgatacctgtcatgccgcaggaataagcaaaaagtgcattaagctaaggccc
atagctgttattaaaggctag
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