Frankliniella occidentalis (western flower thrips): 113213726
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Entry
113213726 CDS
T07591
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc04512
ECM-receptor interaction
foc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113213726
04518 Integrin signaling
113213726
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
foc00536
]
113213726
Glycosaminoglycan binding proteins [BR:
foc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113213726
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
113213726
NCBI-ProteinID:
XP_026288652
UniProt:
A0A6J1T6Y5
LinkDB
All DBs
Position
Unknown
AA seq
1625 aa
AA seq
DB search
MATMSRASRALLAPLLLVALLVAAEVLGGAGAAAGAGKKRKGPKRVQSQQPAQPADYDSP
PDYYDYDAENNEYDGNGGAGEAGPAGPAAAGTPAPLLPPTPPPVTTPQPPDERPTEETDL
RTASSGSTRGPVYTSPWTPTWTPTPSPWTPTPSPWTPRYEFTTERTTPQPPSELEGSCSF
EGRWYRDGEDWKPDACTACVCTGGRVQCAQSGDCNAGPHCTGVVCVDLDCETAKYIPLGQ
CCPVCADEVTAKAVTPLAPTYPPPPVTVEGPRGEPGWRGEPGRPGDGGLPGQPGTPGIPG
SPGPPGHAPDLTSYYQELAAQAAGSEKGPTSNSYPDPFRYLQAQVGPVGPRGPPGPPGPA
GPQGFQGIRGEAGEVGAVGPQGQAGPRGLPGLPGKDGEAGEDGEAGQAGPAGPAGPRGLP
GMPGLSGVKGHRGFPGLDGAKGEQGVAGEKGASGTAGPLGPPGPTGPGGPRGERGREGPP
GPPGIRGIDGTAGPPGQPGAVGKSGPPGFPGSPGNKGDQGAQGVKGSSGLQGPRGESGRP
GQPGDTGPQGPSGKDGSPGDKGSSGSPGIAGPPGFPGARGPPGLNGSPGEPGVKGLPGTP
GERGFKGEAGMKGETGALGQRGLPGAAGPEGKRGKRGMRGPTGPSGPPGERGVAGQRGLP
GPDGAPGPKGQSGDRGAQGPQGLKGASGEPGRPGTPGLQGLRGPAGRPGPPGKTGNPGER
GIQGADGKPGEQGPQGLQGLPGPMGMPGDKGLTGESGKDGEPGPPGPTGPRGDAGKDGAT
GVQGPPGPPGADGERGPPGPAGPTGFQGLPGQPGNPGSPGKDGEAGVQGPPGPPGQAGSR
GERGFHGERGPVGPPGTPGARGEAGAQGADGQPGQPGAKGSKGHQGPMGLVGLPGGRGLP
GLPGDKGERGATGPIGPEGPAGRAGERGPQGIQGAPGPPGEPAERGETGPPGPPGESGAA
GSPGERGPSGTPGPPGFPGAQGLIGLPGSKGERGMNGMKGEQGNPGPSGIPGEQGPPGLV
GLTGAKGARGETGPRGESGLMGPPGRPGEQGLAGHPGNPGAPGAAGVPGIKGTAGDMGRP
GNPGPQGLQGAPGLEGPKGDTGSEGPPGPAGQAGPHGSPGERGLPGLPGPTGPPGARGLR
GASGESGPPGKPGSEGAPGPIGLGGPPGPPGPTGEHGPEGPPGKMGPPGISGRPGDKGPI
GPAGGPGNPGSPGLPGPPGQQGPAGSPGERGLRGEMGPPGAEGQLGPRGKPGPPGPEGGK
GERGELGPKGAKGHRGLIGLQGLPGTPGLNGEKGMAGLPGSPGKDGEPGQRGSPGRDGSP
GPQGLSGPPGPRGPPGDSGSHGSAGNPGPPGPPGPPGETIGYDAAALAAIMGQSQSKGPD
PMMGGDEPPRIFGKELSEAERRELLLKAYNHVKESLERFRRPDGKKDAPARTCRDLHAAH
PELPSGEYWIDPNDGDPRDAILAVCDMERRATCVVPQPSRSPEVNYRGDDQEVWLGDLDD
GIKLTYKSDSNQLGFLQLLTTNAQQNLTYHCKGSVAYHDEAKNTFRKAIKFLAYNDAEIT
ARGNQRFRYEVLEDGCKHRKHEWSKTVLTYRTDKTIRLPVLDMAVKDVGKEGQSFWLEVG
PVCFW
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgagcagggcgtcgcgggcgctcctggcgccgctgctgctcgtcgcgctg
ctggtggcggccgaggtgctgggcggcgcgggcgcggcggccggcgccggcaagaagagg
aagggccccaagcgcgtgcagagccagcagcccgcgcagccggccgactacgacagcccg
ccggactactacgactacgacgccgagaacaacgagtacgacggcaacggtggagcgggc
gaggcgggcccggcgggccccgccgccgccggcaccccggcgccgctgctgccgcccacg
ccgccgcccgtgaccacgccgcagcccccggacgagcggcccaccgaggagacggacctg
cgcaccgcgtcgtcaggcagcacgcgtggcccagtgtacacgtcgccgtggacgccgacc
tggacgcccaccccgtcgccgtggacgcccacaccttcgccgtggacgccgcgctatgag
ttcaccaccgagaggaccaccccgcagcccccgtccgagctcgagggctcgtgctcgttc
gagggccgctggtaccgggacggcgaggactggaagccggacgcctgcacggcctgcgtg
tgcacgggcgggagggtgcagtgcgcgcagagcggcgactgcaacgcagggcctcactgc
accggagtggtgtgcgtggacctggactgcgagacggccaagtacatcccgttgggacag
tgctgtccggtgtgcgccgacgaggtgacggccaaggcggtgacccccctggctccgacg
tacccgccgccgcccgtgacggtggagggtccccggggcgaacctggctggcgcggtgag
cccggacggccaggagacggcggcctccccggtcaacctggaacgcctggaatacccgga
agtcctgggcctcccggacatgcgccagatctgacgtcgtactaccaggagctggcggcg
caggccgcgggcagcgagaagggccccacgtccaacagctacccggacccgttccggtac
ctgcaggcccaggtcgggccggtggggccgcgcgggccgccggggccacccgggccggcg
ggcccgcagggcttccagggcatccgcggcgaggccggcgaggtgggcgccgtcggaccg
cagggccaggccgggcccagggggctgccggggctcccgggcaaggacggtgaggctggc
gaggacggcgaggccggccaggctgggcctgcgggccccgccggcccccgggggcttccg
ggcatgcccgggctgtccggggtcaaggggcaccgcggcttccccggtttggacggcgcc
aagggcgagcagggcgtggccggggagaagggcgcctcgggtacggcggggccactcggg
ccaccgggacctacgggcccgggcgggccgcgtggcgagcggggcagggagggcccccct
ggaccgcctggcatcagaggcatcgatgggaccgccggacctccgggacagccgggtgcc
gtcggcaagtcggggccgccgggcttcccaggcagccctggcaacaagggcgaccagggc
gcgcagggggtgaagggcagctctggactccagggcccgcggggtgagtctgggcgccct
ggacaaccgggagacactggcccccaggggccctccggcaaggacggcagccccggcgac
aagggaagctccgggtcccccggcatcgcggggccgcctggcttccctggagcgagaggc
ccccccggcctcaacggcagtcctggagagcctggagtcaagggcctaccgggcacgcct
ggagagcgcggcttcaagggcgaggccggcatgaagggggagactggcgccctcgggcag
cgcgggcttccgggggcggcggggcccgagggcaagcggggcaagcgggggatgcggggg
ccaacgggccccagcgggccccccggcgaacggggcgtggcggggcagcgggggcttccg
ggtccggacggcgcacccgggcccaaaggacagtctggtgatcgcggcgcccagggaccc
caggggctcaagggcgcgtctggagagccaggccggccgggcacgcctgggctgcagggg
ctgcgcgggccggcgggccggccgggccccccgggcaagacgggcaaccccggcgagagg
ggcatccagggcgcggacggcaagccgggcgagcagggcccgcagggactccaggggctg
cccgggcccatgggcatgccgggagacaaggggctgacgggtgagtccggcaaggacggc
gagccagggccaccgggccccaccggacctcgcggagacgcaggcaaggacggagctaca
ggtgtccagggtcccccaggacctccaggtgcagacggagagcgaggtccccccggacca
gcagggccaactggattccagggtctccctggtcagcctggaaatccaggttctccagga
aaggacggcgaggcgggtgtgcagggtcccccaggtcccccgggccaggcaggttcccgc
ggagagcggggtttccacggagagaggggccccgtcggccctccagggactccaggagcc
aggggcgaggccggcgcgcagggcgctgacggacagcctggccagcccggagccaagggc
agcaaggggcaccagggccccatgggcttggtgggtctccccggtggcagaggcttgcct
ggacttccaggagacaaaggagagcggggagcgacgggtcccatcgggccggagggcccc
gcgggtcgcgccggcgagcgcggtccccagggtatccagggcgccccgggtcctccggga
gagccggcggaacgcggtgagaccggcccgccggggccccccggagagtccggcgcggcg
ggctcccccggtgagcggggcccgtccgggacccccgggccgcccggcttccccggcgcc
cagggcctcatcgggctgcccgggtccaagggcgagcgcggcatgaacggcatgaagggc
gagcagggcaaccccgggccgtccggcatccccggcgagcagggccccccgggcctggtg
gggctgacgggggccaagggcgcccggggggagacgggcccgcgcggggagagcggcctc
atgggcccgcccggccgccccggcgagcaggggctagcgggtcacccgggcaaccccggc
gcgcccggtgccgcgggcgtccccggcatcaaggggacggcgggcgacatgggccgaccg
ggcaaccccgggccgcagggcctgcagggcgcccccgggctcgagggccccaagggagac
accgggtccgagggccccccaggcccagctggccaggccggcccgcacgggtccccaggt
gaacgtggtctgccgggactgccggggcctacgggacctccgggagcacgaggactccgc
ggtgcttcgggcgagtcagggccgccgggtaagcccggctccgagggtgcccccggccct
atcgggctgggcgggccccccggccccccgggccccaccggcgaacacggaccggaggga
cctcctggaaagatgggaccccctggaatcagcggacggcccggagacaaagggccgatc
ggtcctgcgggcggccccggcaacccagggtcaccaggacttccgggtcctcccggacag
cagggtcccgcaggctcgcccggcgagcggggcctccgaggagagatggggccgccaggg
gcagagggacagctgggaccccggggcaagccgggtccgccgggccccgagggcggcaag
ggggagcgcggcgagctgggccctaagggagccaagggacaccgagggctcatcggtttg
cagggactgcctgggacacccgggttgaacggcgagaaggggatggcgggcctgcctggt
agtccaggcaaggacggcgagccaggccagaggggtagccccgggcgcgacggcagcccc
gggcctcagggcctgtccgggccacccggccccagggggccgcccggcgactcgggctcg
cacggcagcgctggaaatccaggacccccggggcctccagggcctccaggagagaccatc
ggctacgacgcagcggccctggcggccatcatgggccagtcgcagagcaagggacccgac
ccgatgatgggcggggacgagccgcccaggatcttcggcaaggagctgtccgaggcggag
cggcgcgagctgctgctcaaggcctacaaccacgtcaaggagtccctggagaggttccgc
cggccggacggcaagaaggacgcgcccgccaggacgtgccgcgacctccacgccgcgcac
cccgagctgccgtcaggcgagtattggatcgaccccaacgacggcgacccccgcgacgcc
atcctggccgtctgcgacatggagaggcgggcgacgtgcgtcgtgccgcagcccagccgc
tcccccgaggtcaactaccgcggcgacgaccaggaggtctggctgggcgacctggacgac
ggcatcaagctgacgtacaagtcggacagcaaccagctgggcttcctgcagctgctgacg
accaacgcgcagcagaacctgacgtaccactgcaagggctcggtggcgtaccacgacgag
gccaaaaacacgttccgcaaggccatcaagttcctcgcctacaacgacgccgagatcact
gcccgcggcaaccagcgcttccgctacgaggtcctggaagacggctgcaagcaccgcaag
cacgagtggtccaagacggtgctgacctaccggacggacaagaccatccgcctcccagtg
ctggacatggccgtcaaggacgtgggcaaggagggccagagcttctggctggaggtcggg
ccggtgtgcttctggtag
DBGET
integrated database retrieval system
