Frankliniella occidentalis (western flower thrips): 113215028
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Entry
113215028 CDS
T07591
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113215028
03036 Chromosome and associated proteins [BR:
foc03036
]
113215028
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113215028
Chromosome and associated proteins [BR:
foc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
113215028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SH2
S1
SPT6_acidic
Tex_central_region
HHH_9
Tex_YqgF
HHH_3
Tex_N
Spt6_S1
OB_RRP5_4th
S1_RRP5
HTH_10
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
113215028
NCBI-ProteinID:
XP_052133580
UniProt:
A0A9C6XCJ4
LinkDB
All DBs
Position
Unknown
AA seq
1568 aa
AA seq
DB search
MRKRKGIDTDDEDDVWDDDDLVDDDDYDLLEENLGVKVDRKKKFKRLKRITAEESEDEQE
EERGDERDAIAKDLFEGSDNEEDRSSERRDETAGDFDEECDEEGNDYSDADDFIVDDEGR
PITVKRQKRKPIFTDAALQEAQDIFGVDFDYDEFDKYDQEEEEEEDEDYQKEDDPGRRRK
AKKSIFEIYEPSELKRGYFTDLDNQIRNTDIPERMQLRDTPVTPETDDKLEDEAAWIFKQ
AFCKPSISTQHQHGLNSESEKIRKEPSATTYKIKKALDFMRNQSLEVPFIAFYRKEYVSP
ELTLSDLWKVYKYDEKWCQLSARKQTLIKLFEKMRDYQGEQLTKDSTADIPEDVRVLTDD
DIDRVRAVQTQEDFRDVSLHFQLYYSHEVPAMQAACKAIEKLERQQRKEAQRNRRERRKK
KKTIVNDDGEEEEVTDDDVEDDDDLDDEEDDMEEDEPQEQVKQAVRSGPYSMCRKARLAG
FAKRFGLSPEQFAENLRDNYQRHEVEQESVEPLVLAKEYLSAQFPNSEEVLKAVKYMVAA
QLSREPLVRKCVREALFERSKIDVIPTKKGIKEIDENHPIYGLKYLKGKPVRDLSDEQFL
KLIMAEEEKNITISFSDQIEGLTTASFIEEAKQLYLRDEFIKHVQEWNTIRVECVDLALR
KMLIPEIRKELKSVLLNEAKDCVLRACCRRLYNWIKIAPYNVDFPDEDEDEWDTSKGLRV
MGLAYVPDFSQAAFACIVAPDGEVTDYLRLPSILKRRNGYREDDKLQKEADLTALRYFIS
TKKPHVIAVGGESRDALMIIQDLKNVVKDLVEDDQFPSINVEIVDNDLAKIFANSIKAEN
EFRDYPLLLRQSISLARRLQDPLIEYSQLCTSDEEILCLRFHPLQDQLAKEDLLEALYLE
FVNRTNEVGVDINVAVQTGQTANLVQFICGLGPRKGTALIKLLKQTNQRLENRTQLVTSC
HMGPKVFINCAGFIRIDTNSLGDSTEAYVEVLDGSRVHPEAYEWARKMAVDALEYDDEDA
NPAGVLEEILESPERLKDLDLDAFAEELERQGFGNKSITLYDIRNELNHRYKDMRTPFAS
PNPEELFDILTKENPEIFYLGKMILATVIGIQHRKPQHEQLDNANPVRNDETGLWQCPFC
LKNDFPELSEVWNHFDAETCPGKATGVKLRLDNGIQGYIHIKNLSDKHVSNPEERVKTNQ
IIHCRITKIDVNRFSVECTSKSSDLMDANHEWRPNRDPYYDTERESKDKKVEEDAKKMKQ
QHAYIKRVIVHPSFHNISFKEAEKLMASLDQGECIVRPSSKGADHLTVTWKVADNIYQHI
DVREEGKENSFSLGQSLWIGKDEFEDLDEIIARHVNPMASHARDLISFKYYRETMGGKKD
KAEEILKDERRRNPSKIHYIISASQSLPGKFMLSYILNRCRHEYVTVTPDGFRFRQQMFD
NLNELFKWFKEHFRDPIPGSTPSTPRAGITSRTPFPATPNLSMANIDPAIQRVAQSMPTH
MLHSLSQVASQTPHYSHTPGVYGASGVHGYPNTPYTPSGRGAGLGGPGGVPYLAAFEKRP
IIKLNYVK
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaacggaaaggaattgacactgatgatgaagatgatgtgtgggatgatgatgat
cttgttgatgacgacgattacgaccttctcgaagaaaatctcggggtgaaagttgacagg
aagaaaaagtttaagcgtttaaaacgtattactgctgaagaatctgaagatgagcaagag
gaagaaagaggagatgaaagggatgcaattgccaaggacctttttgagggctctgataac
gaagaagatcgatcctcagaaaggcgagatgaaactgctggtgattttgatgaagaatgt
gatgaagaaggaaatgattactcagatgcagatgattttattgtcgatgatgagggacgc
cctatcactgttaaacgccaaaagcggaaacctatttttactgatgcggctcttcaagaa
gcacaagacatctttggagtagattttgactatgatgagtttgataaatatgaccaagaa
gaggaagaggaagaggatgaagattatcaaaaagaggatgatcctggaaggaggaggaaa
gcaaagaaatctatatttgaaatttatgaacccagcgaacttaaaagaggctattttact
gatttagataatcagattcgtaacacagacattcctgaaaggatgcagttgcgtgatacg
ccagtaacaccagaaactgacgataaattagaagatgaggctgcttggatcttcaagcaa
gccttttgcaagccttctatatcaactcagcatcagcatggcttaaattctgagagtgaa
aagatacgaaaagaacccagtgcaacaacatataaaattaagaaggcccttgacttcatg
cgaaatcaaagtttggaagttccttttattgcattttataggaaagaatatgtttctcca
gagctcacattaagtgatctgtggaaggtttacaagtatgatgaaaagtggtgtcagtta
tcagcacgcaaacaaacacttattaaactttttgaaaaaatgcgtgattatcaaggggag
cagcttactaaagacagcacagcagacattcctgaagatgtcagagttttgacagatgat
gatattgaccgagtgcgagctgtacagactcaagaggattttcgagatgtctccttacat
tttcaactctattattcacacgaggttccagctatgcaagcagcttgcaaagctatagag
aaactagagcgacagcaaaggaaagaagcacagcgtaatcgacgcgaaagaaggaagaaa
aagaaaactattgttaatgatgatggtgaagaagaggaggtgactgatgacgatgtagag
gacgatgatgaccttgatgatgaggaagatgatatggaggaggatgaacctcaggaacaa
gtgaagcaggctgttaggtctggaccatacagtatgtgtcgtaaagcacgattagcagga
tttgccaaacggtttggcctctctcctgaacagtttgctgagaacttgagagacaattac
caacgacatgaggtagaacaagaatctgttgaacctcttgtgttagctaaagaatatctt
tctgcacaatttcctaattctgaggaggttttgaaggctgttaagtatatggttgctgca
cagttgtctagggagccattagtgcggaaatgtgttagggaggccctttttgagcgatcc
aaaattgatgtaattcctacaaagaaaggaataaaagaaattgatgaaaaccaccctatt
tatggactgaaatatctgaaagggaaacctgttcgtgacttatctgatgaacagttctta
aagcttataatggctgaggaagaaaagaacataactatctctttttctgaccaaatagaa
ggcttgacgactgcttcatttattgaagaagccaaacaactgtaccttagggatgaattc
attaaacatgtccaagaatggaatacaattcgagtagaatgtgttgatcttgctctccgt
aaaatgttaattccggaaattagaaaagaacttaagagtgtattactgaacgaggcaaag
gattgtgttctgcgtgcatgttgccgacgtttgtacaactggataaagattgcaccatac
aacgtagactttccagatgaggatgaagatgagtgggacacatcaaaggggcttcgtgtt
atgggtcttgcctatgtccctgatttttctcaggctgcatttgcttgtattgttgcccca
gatggagaggtgactgactatttacggttgcctagcattttgaagaggcgcaatggttac
agggaagatgataagcttcaaaaggaggccgatcttactgcattgcgctattttatttca
actaagaaacctcatgttattgctgtgggtggagagagccgagatgcattaatgattatt
caggacctgaaaaatgttgtgaaggatttggtggaagatgatcagttcccttccatcaat
gttgaaattgttgacaatgaccttgccaaaatttttgccaactctattaaggcagagaat
gagttccgagattatcctctgcttttaagacaatctatatctcttgcacgccggttacaa
gatcctttgatagagtactctcaattatgcactagtgatgaagaaattttgtgtcttcgg
tttcaccccctccaggaccaattggctaaagaagacttattggaagctttgtacctggag
tttgtgaatcgaacaaatgaagttggagtagatattaatgttgctgttcaaactggtcaa
actgccaaccttgttcaatttatttgtggtcttggtcctcgcaaaggaacagctctaatc
aagcttctaaagcagacaaatcagcgtttggaaaaccgtactcaattagtaacctcatgt
cacatgggacccaaggtctttattaattgtgctggattcattcgtattgacacgaattca
ttaggagacagcaccgaagcatatgttgaggttcttgatggatctcgtgtacatcctgaa
gcctatgaatgggcaagaaaaatggcagtggatgccttggagtatgatgatgaggacgcc
aaccctgctggggtgttagaggaaattttggagtctccagagagattaaaagatcttgat
ctggacgcttttgccgaagaacttgagagacaagggtttggcaataagagcataactttg
tatgacatcagaaatgaacttaaccacaggtacaaggatatgcgtactccatttgcttcg
cctaatcctgaagaactttttgatattctaactaaggagaaccctgaaatattttatctt
ggaaaaatgatattagctactgtaattggcattcaacatcggaaaccacaacatgagcaa
ttggataatgccaaccccgtcaggaatgatgagactggcttgtggcaatgtcctttctgt
ttgaaaaatgatttcccagagctctcagaagtttggaatcattttgatgctgaaacatgt
ccgggaaaagctactggtgtgaagttacgccttgataatggtattcaaggatacattcac
attaaaaacttgtcagacaagcatgttagtaatcctgaagaaagagttaaaacgaaccag
ataattcattgtcgcataacaaagatagatgtgaatagattttctgttgagtgtacctcc
aaatcttcagacctcatggatgccaatcatgaatggcgacctaatcgagacccgtattat
gatactgagagggagtcaaaagacaagaaagtggaagaggatgctaaaaaaatgaagcaa
caacatgcctacatcaaaagagttattgttcatccttctttccacaatatttcatttaaa
gaagctgagaaactcatggctagtcttgatcagggtgaatgtattgtcagaccatctagt
aagggagctgatcatttgaccgttacttggaaagtagctgacaatatctatcagcacatt
gatgtcagagaagaaggtaaagagaactctttttcacttggccaatctttgtggattggc
aaagatgagtttgaagaccttgatgaaatcatagctcggcatgtgaatcccatggcttca
catgctcgtgatttgatatcgttcaaatactaccgtgaaactatgggtgggaaaaaggat
aaggcggaagaaatactgaaggatgaaagacgtagaaatccaagcaaaattcattacata
atatcagcatctcagtccctccctggaaaatttatgctttcatatatattaaatcgatgc
agacatgaatatgtgactgttactcctgatggatttagatttagacaacaaatgtttgat
aatttgaatgaacttttcaagtggttcaaagaacattttagagatcctattcctggaagc
acacctagcactcctcgtgctggaattaccagcagaacaccttttccagcaactccaaat
cttagcatggctaatattgaccctgccatccagagagttgcacagagtatgccaacccac
atgcttcacagcctttcacaggtggctagtcagactccacattattctcacacccctggt
gtttatggagcaagcggcgttcatggttaccctaacactccatatacaccttcaggacgc
ggagctggactcggcggcccgggtggagttccgtatctggcagccttcgagaaacgccca
ataatcaaattaaattatgtgaaatga
DBGET
integrated database retrieval system
