Frankliniella occidentalis (western flower thrips): 113217989
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Entry
113217989 CDS
T07591
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113217989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
foc03041
]
113217989
Spliceosome [BR:
foc03041
]
Complex A
U1 snRNP components
U1 related factors
113217989
Complex B
113217989
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Spherulin4
WW_2
DUF4298
Motif
Other DBs
NCBI-GeneID:
113217989
NCBI-ProteinID:
XP_026293893
UniProt:
A0A6J1TKN3
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MAGPEGGGPPGAFTAGLPHLASGYIPTPAMANPPGLPPQMFSMPPPGFGVPGYVAPDGKP
ITTNGDPGLQMNGDDNSNSSVPLKKSDWTEHTAPDGRIYYYNAVTKCSLWEKPDELKTAT
ELLLSKCPWKEYISENGKTYYHNVDTKESRWVIPDELQDLKARIAADEVKSITVPPLAGG
GGPAMPAMPMGSAPIIPIPPALASGVSLSPVMGHHGTPPLNSKNSSALDQAMAATLATLG
GGDAPSNKGSAPASRNGTPEPKVFKDKKEAIEAVKDLLRDHDVPSNASWEAAVKLIQHDP
RYAVIKNLNERKQAFNAYKTQKLKEEKEGQRLRAKKAKEDLEEYLMNNPRMTSLTKYYRC
EEMYGVLDVWKNVSEHDRRDIYEDVIFNLAKKEKEEAKALKKRNMKSLAEILDSMTNISY
RSTWQEAQQMLIENPAFADDAELLAMDKEDALIVFEDHIRELQKEEEEEKERDKRRLKRQ
HRKNRDAFITLLDELHEQGKLTSMSLWVELYPIISADLRFSAMLGQGGSSPLDLFKFYVE
DLKSRFHDEKKIIKEILKEKNFDVQVTTSFETFATVVCDDRRSATLDAGNVKLTYNALLE
KAEAREQQRQKEEARKFRKLEAAFKQLIRSSDITYDTPWEEARLKLEGDKAFEAITLESE
RVRIYKEFQHENEEACGHHHIRPKKSKKAKSKKKKSNSRSRSRSFSEEEDEHGKRKKRKR
RSRSRSESHSSSDSERHLSKKSRRKKAKKRKGRSRSLSLQRSGSDELEGSRSKPVPLDGD
PNSDTSGFPPEVDISKDNPDSPAKDESKEEGEHTDRASEEKELTEEELQNQRMLLLKQLE
QQED
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggctggccctgagggcggtggaccaccaggggcattcacagcaggcttgccccatcta
gcttctggttatatacctactcctgccatggctaatcctccaggcttacctccgcaaatg
ttcagcatgccaccaccggggtttggtgttcctgggtatgtagctcctgatggcaaacct
attacaaccaacggagaccctggattacaaatgaatggtgatgacaactctaactcatca
gttccattaaaaaagagtgattggactgaacacactgctccggatgggaggatttattat
tataacgctgttacaaagtgcagtttatgggagaaaccagatgaattaaaaactgcaaca
gagctactactgtcaaagtgcccatggaaggaatatatttcagaaaatggcaaaacatac
tatcataatgtggataccaaggaatcacgatgggttattccagatgaattgcaggatcta
aaagctagaatagcagctgatgaagttaagagcattacagtccctccccttgccggaggt
ggagggccagctatgcctgctatgcccatgggtagtgctcctattataccgattccacca
gctcttgcatctggagtatcattgagccctgtgatggggcaccatggcactccaccccta
aacagtaagaacagttcagcattagatcaggcaatggcagcaactcttgccacacttgga
ggaggtgatgctccgtctaacaaaggttctgcacctgccagtagaaatggaacgcctgag
ccaaaagtgtttaaggataaaaaagaagctattgaggctgtgaaggatttactaagagat
catgatgtaccaagcaatgcatcatgggaagcggcagttaaattaattcagcatgacccc
agatatgctgtaattaaaaacttaaatgagaggaaacaggcttttaatgcatacaaaaca
caaaagctaaaagaagagaaggaaggacaacgtttaagagccaagaaagcaaaagaggat
ttggaagaatacttaatgaataatcctaggatgacttctctgactaagtattacaggtgt
gaagaaatgtatggtgttcttgatgtgtggaaaaatgtgagtgaacatgaccggcgagat
atatatgaggatgttatatttaatctggctaagaaagaaaaagaagaagctaaggctctc
aagaaacggaatatgaaatcattagctgaaatcttggactccatgaccaacatcagttac
agatctacttggcaggaagcacagcaaatgcttattgagaaccctgcatttgctgatgat
gctgaattactagctatggacaaagaagatgctttaattgtgtttgaggatcatataaga
gaacttcaaaaagaagaggaggaagaaaaggagagggacaagcggcgacttaaaagacag
catcggaaaaatcgagatgctttcattactcttctagacgaactacatgaacagggaaaa
ttaacatctatgtcattatgggtggaactttaccctattataagtgctgatctgagattt
tctgccatgctcggtcaaggaggatcctctcctttagatttgtttaaattttatgttgaa
gacttaaagtctcgtttccatgatgaaaagaaaattatcaaagaaatattgaaagaaaag
aactttgatgttcaagttacgacgtcatttgaaacatttgccactgtagtctgtgatgat
cgaagatcagccaccttagatgcgggtaatgtcaagcttacatataatgctctgcttgag
aaggctgaggcaagagaacaacagcgccagaaggaggaggcacggaagtttaggaaactt
gaggctgctttcaagcaactcatcagatcttcagatataacttatgatactccatgggaa
gaggctcgcctgaagttagagggagacaaggcttttgaagctataacccttgagtctgaa
agagttcgtatttataaagaatttcaacatgaaaatgaagaggcctgtggacatcaccat
atacgtcccaaaaaatctaaaaaggctaaatccaagaaaaaaaaatcaaactctagatct
cgatctcgttcattttctgaagaagaagatgaacatggcaagagaaagaagcgcaaaagg
agatcacgctctagaagtgagagtcattccagttcagattcagagcgtcatctttccaaa
aaatcaagacggaagaaagccaagaaacggaaaggaagaagtcgctcactctctcttcaa
agatcgggatcagatgaacttgaaggtagcagaagcaaacccgtacctctggatggggat
cccaattctgacacttctggatttcctcctgaagttgatatttcaaaagacaatcctgat
tctccagctaaggatgagtcaaaagaggagggagaacatacagacagggcatcggaagaa
aaagaactcactgaagaagaacttcagaatcaaagaatgcttctgttgaagcagcttgag
caacaagaggattaa
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