Frankliniella occidentalis (western flower thrips): 113218060
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Entry
113218060 CDS
T07591
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113218060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113218060
Enzymes [BR:
foc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113218060
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113218060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_1
DUF2492
Motif
Other DBs
NCBI-GeneID:
113218060
NCBI-ProteinID:
XP_026294026
UniProt:
A0A6J1TTR7
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All DBs
Position
Unknown
AA seq
597 aa
AA seq
DB search
MDVTRENFYTILPNLKRALSDAEFITIDFEFTGLTSGGRDLEPMPFDTPRQYYEKLHQKA
LDFLPLQLGLCIFQYDASENKYTYQAYNFFIFPFSKLKGFPNSTFLCQSSSVAFLSSCGF
DFNKAFGAGIPFLTQPEEDKLKLSIKDRQQKIVRENQKDSFDVSVPEDLKIVFQSNMKKI
KEFLEDTSEKKADSFILDRCNRFMRRLLYQEVPKEFGDTVYLETCDDSDMTMMIMRGGGE
EFKKLREEEKKKNEWKEFEEAVGLSHLIKAIAESGKLIVAHNCLLDICHLVHRFRYPLPP
NYDEFKEIVHHIFPRIIDTKFMAFEQQFKDLISAGSLGQLLDTVSTAPFEMPKIEGNVEG
HSYNNLVDKSHEGGYDAFITGQCFLAMSQYLAKDQGIKFSNIGSIKEILSQIENRLYLMK
IQDIRYLLLGGPDVKPPRNHVFHLRFPREWKQYDIVELFKPYGPVFISFIDERSAYVALH
KRDQAKFVMKSLTGNDFYKLTSFGAYQKQIERKSPPLAQPASPSLDLVRKRKLRDSTDGA
SASPDVFKKHRSLDQPKRSIDPIPEETEVDNIGSSDHTSTENQSLAPKEFAESEVWG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgacacgagaaaatttctacacaatcctcccaaatctcaagagggcattgtct
gatgccgaatttatcaccattgactttgaatttactggcctaactagtggggggcgggat
ttggaacccatgcctttcgatacacctcggcagtactatgaaaaattacaccaaaaagcg
ttagatttcctacctctacagttaggtctttgtatatttcaatatgatgcgtctgaaaac
aaatacacttatcaggcttataatttcttcatctttcccttttcaaagttgaaaggcttc
ccaaacagcacttttctatgtcagagctcatcagtagcattcctgtcatcttgtggattt
gatttcaacaaagcctttggtgcaggtattccttttttgactcagccggaggaagacaaa
ttgaaattaagtattaaagatcgtcaacaaaagatagtaagggaaaaccaaaaagattcc
tttgatgtttctgttcctgaagatctcaaaattgtatttcagtccaatatgaaaaaaatt
aaagaatttttagaggacacttctgagaaaaaagctgatagctttattttagaccgttgc
aatcggttcatgagaagacttctgtaccaagaagttccaaaggaatttggagatacggtc
tatttagaaacatgtgatgactctgacatgacaatgatgataatgagaggtggaggtgag
gaatttaaaaaactaagggaagaagagaagaaaaaaaatgaatggaaggaatttgaagaa
gctgttggtctgtcacacctgatcaaagccatagctgaatctgggaaattaatagttgcc
cataattgtcttttggatatttgtcatttagtccaccgcttccgttacccccttccccca
aattatgacgaattcaaggaaattgttcatcacattttcccaagaattatagatacaaaa
tttatggcatttgaacaacagttcaaagatctgatttcagctggctcattaggccaatta
ttggacactgtgtcaacagcaccctttgagatgccaaaaattgagggaaatgtggaagga
cactcatacaacaacttggttgataaatcccatgaagggggctatgatgcctttattact
ggacaatgcttccttgctatgtcccagtatctagctaaagatcaaggcataaaattcagc
aacatagggtccataaaagaaatcctgtctcagattgaaaacaggctgtatctaatgaaa
attcaagatatccgatacttgttacttggaggccccgatgtaaaaccaccccgaaatcat
gtatttcatttgagatttccaagagaatggaaacagtatgacattgtagaattgttcaaa
ccctatggccctgtttttatatcttttattgatgaacggtctgcatatgttgctttacac
aaaagagatcaagccaaatttgtcatgaaatctttgacaggaaatgacttttacaagctg
acttcttttggtgcatatcagaaacaaattgaaaggaaatctcctcctctggctcaacct
gcatctcctagcctggaccttgtaaggaaacggaaattaagggattccactgatggtgcc
tcagcatcacccgatgtatttaaaaagcaccgcagtcttgaccaaccaaagcgcagcatt
gacccgattcctgaggagaccgaagtggacaatataggcagtagtgatcacaccagcaca
gaaaatcagagtcttgcacctaaggagtttgcagagagtgaagtttggggctaa
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