Frankliniella occidentalis (western flower thrips): 113218095
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Entry
113218095 CDS
T07591
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113218095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113218095
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113218095
mRNA degradation factors
5'-3' decay
Decapping complex
113218095
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
113218095
NCBI-ProteinID:
XP_026294080
UniProt:
A0A6J1TRC8
LinkDB
All DBs
Position
Unknown
AA seq
807 aa
AA seq
DB search
MSTIRNSSVVETTLLSPQLQAVRRVAFLQDSCAGVEDDSHGMDEEEEQYDALNDETFGTA
MDGDWEHDHEELAKITETSRGWKDDYNDVNHNDHDDLRNGQDHLEASLSQLVLEDNDEVA
INRRPTSSHLSHSNLVPYPDSPNALRNSVWAVGKHDGPLSASSPLRPRVNVPQGVKNVCT
VEELERNLLQMRSGSGSSLPPPPGLGNPVSGGTLRLEDVERKITQVPPQARMNMVPEMPS
RFPPGLGRASILLNTMQNQRLMGPPGHLEAQKVPLQQLPLGFNSSNLPPHLAYRQHTFQP
IHPGPGIVPLGPHQAQQHPPPFNMNGPRIPPPFHMNNHMPPHLHQQPQHPPHHQHMPHQQ
HRNSHPQPYHHHHQQQHHQQQHWVNGAGDYDEYAGLMTPWQKQWLLNIQTLQLNVGVPYV
VDYYYTVYKTRQERRRCLTNKSEERSAGRPESVKLRERPESAKPGRDRPPSVMGPAKAYT
PLQFENSLGKLQCVSVTAPRKLIDMDIVGSEGQEAPSSQRDLKKTKQLLLEIERLYVLLL
ELEDAFDPQAIEAVAEAAIARAAKDPPDLEPEPEKPSPEELIQRMTSVLVQGDKLYGFMG
IRKGKTFLLRLLPHVPLHTGVHTALWGQVLVGLFGVVRRDQADCLLLRFLPELKRWLEVC
DLSLILKVVGEVVAEASLKSKSGKSALATAVNSKFGVSALSAIISSSERHLLEMNQKQKD
QWAEFLSAIAVVAETARLSDESSSQSFSLSSETLQRHIDACGSALTNKYGAFLKRLFLSD
SLKTESVTATDKSNRRSGDSTLHTIIN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaatacgcaacagctctgttgtagaaactactttactttcaccacaattacaa
gctgtccgtcgtgttgcatttttgcaagattcgtgtgctggtgtagaagatgattcccat
ggtatggatgaagaagaagagcaatatgatgctctcaatgatgaaacatttgggactgcc
atggatggtgattgggagcatgaccatgaagaattggctaaaataacagaaacctcccgt
ggttggaaagatgactataatgatgttaatcacaatgatcatgatgatctaaggaatggt
caagatcatcttgaggcaagtttatctcagttagtattagaagataatgatgaagttgcc
attaataggaggcccacctcttcccatctttcacattcaaatctagtgccgtatccagat
tctccaaatgcactgcgtaattcagtgtgggcagttggtaaacatgatgggcctttatct
gcatcctccccacttcgccctagggtcaatgtaccacagggtgttaagaatgtttgcact
gttgaggaacttgaaagaaacctccttcaaatgcgtagtggcagtggttcatccctccct
cccccaccaggcctaggaaacccagtctctggcggtactttgcgccttgaagatgttgaa
aggaaaataactcaagttccacctcaggctagaatgaacatggtccctgaaatgccctca
agatttccacctggcttagggagggcaagcattctcttgaacacaatgcaaaatcagaga
ctgatgggtcctccagggcatttagaggcacaaaaggttccattacaacaactgcctctt
ggatttaacagctcaaacttgccgccacatctagcttaccgccagcacacatttcagcca
atacaccctggtcccgggattgtgcctctaggtcctcatcaggcacagcagcatccacca
ccgttcaatatgaatgggcccagaatacccccgccatttcacatgaacaaccacatgccg
cctcacttacatcaacagccccagcatccaccacaccatcaacatatgcctcaccagcaa
caccgaaattctcatcctcagccgtaccatcaccatcaccaacaacagcatcaccagcaa
cagcattgggtgaatggagcaggagattacgacgaatatgcaggattaatgacaccctgg
cagaagcaatggctgctcaacatacaaacacttcaactcaatgttggagttccctatgtg
gtggactattattacactgtctacaagactcgtcaggaaaggagacgctgcctaacaaat
aaatctgaagaacgttctgctggaagaccagagtcagtaaaactgagagagcgcccagaa
tctgccaaacctggcagggatcgccccccatctgtaatgggaccagctaaagcttacaca
cctcttcagtttgaaaattctttaggaaaacttcagtgtgtcagtgtgacagctccccgt
aaactaatagacatggatattgtgggctcagaagggcaagaagcaccatcctctcagaga
gatttgaaaaagacaaaacaattacttttagaaattgaaagattgtatgttctacttttg
gaactagaagatgcatttgacccacaagcaattgaggcagtagctgaggctgctattgca
agagcagctaaagatcctccagatcttgagccagaacctgaaaagccttcccctgaggag
cttattcaacgtatgacaagtgtccttgttcaaggcgacaagctctatggattcatgggt
atcagaaaaggaaagactttcttgctgagacttttacctcatgtgccactgcatactgga
gtccatacagctttgtggggccaagtccttgtgggattatttggtgttgtaagacgagac
caagcagattgtcttctcttacgctttcttccagaactcaaaagatggttggaagtctgt
gatttgtctctgattttaaaagttgttggtgaagttgttgctgaagctagtcttaaatcc
aagtctggaaaaagtgctcttgctacagctgtcaatagcaagtttggagtgtcagcctta
agtgctatcatctcatcttcggaaaggcatttattggaaatgaatcagaaacaaaaagat
caatgggccgagtttttatcagcaatcgctgtagttgctgagacagcgcgcctttcagat
gaaagttcttctcaatcattctctttatcttctgaaactttacagagacatatagatgct
tgtggatctgctctaacaaataagtatggagctttcttaaaacgtctttttttaagtgac
tctctaaagactgaaagtgttactgctacagataaatcaaatagaagatctggtgattca
acacttcatactatcataaattga
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