Frankliniella occidentalis (western flower thrips): 113218178
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Entry
113218178 CDS
T07591
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113218178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foc03021
]
113218178
03019 Messenger RNA biogenesis [BR:
foc03019
]
113218178
Transcription machinery [BR:
foc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113218178
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113218178
U7-dependent histone pre-mRNA processing factors
113218178
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Terminase_6
GCP5-Mod21_N
Motif
Other DBs
NCBI-GeneID:
113218178
NCBI-ProteinID:
XP_026294194
UniProt:
A0A6J1TL22
LinkDB
All DBs
Position
Unknown
AA seq
1149 aa
AA seq
DB search
MGEHEKTFNKIVEWLNEASTSTDQKLKVANISKVQELLIHQNPQLLESFLDDVLAFQSDR
TMEVRRSVVGFIEESCKKDPAILPRVMDSLDLLLRDSVPQVQKRVVQAASQIYRGTLMYI
ARTQPVPAQMEKAWGAMCTMKSEIVKLIDSDNDGIRTQSVKFLEGVVLLQTYPEAESMVR
ENDFNLEDIPLTLKIVRRRRLEEEASMIFQLLVKFHGEAHVSSVNLMTCMGSLTLIARMR
PQFMGKVITCLENLNKKLPPTLSKSQVNSVRKHLKLQLTNLLKQPSAVDYHPEIMKLLAD
LGCTPQEIAKIMPKVDDKSRRNHKRPGTESASSLHKRPKLEALYRPEPVTEQKKSHSSKA
IPDVPPELTEKFIAERLAPETVSELVLAALHQVPASMPPHFPTSYTPFKEPGSQAHIQYL
AKLLHSQMSGSAGRQVPRKSGRVLTELEEDDLDEVAAPPPPKAAAPVAPVAAALEPVLLP
PPPPVEELMDQDGDDLEGPLLPQRESNEQLMSEREKLKELTPMTPMTRPLKQKARALKLA
EITRPLSQEMKTKMCLSAVKRILNAEKTAQFGGVNAIRSKIIVTLASTYNSDVRGDILQF
VVDDLQNKLDLDLAISWLYEEYSLMQSFTRKPVFNEDDGSAVKRYVKLFCTLAVHLAEKP
EREPLLKRLYLEAPCITEEATDILKSLSCDETRCSVGLQLLQSLVIRRPPKQLTYLNALL
EHSAHDSTEVRSNGMKCVLALYDDRSDLRSIIEEYAIMYLGFLQLPAPPDVLFGAERGRP
SKADTWAEGPTKACLYLYLELLPHEHRLIHELTRVYAQTVADVKRIILRLLDAPVRGMGM
DSPELLKLVEECPKGAETLVTRVIHILTDKTPPSAELVKRVRELYQSRVSDVRFLIPVLN
GLTKREVIDSLPRLIKLNPIVVKEVFNRLLGNHSDSSSHNSPLTPVELLVALHVIDPKKC
ELKTVIKATTLCFSEKQAYTQENLAIVMQQLMEMNPLPTLLMRTVIQSLAAYPNLSGFVM
NILQRLILKQVWTQRKVWEGFIKCCQRTKPQSFQVLLQLPAPQLQEVLDSCPEMRQPLLQ
HVQSFTDTQRSHVPQSVMDVLTGTRHVVQEDYDAQIAEPMSPDGLTIDVREDAFQENSGT
SEPLPPGMD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaacacgagaagacgtttaacaagattgtcgagtggcttaatgaagccagtacc
tctacggatcaaaaattgaaagttgcaaatattagcaaagttcaagaacttttaattcat
caaaatcctcagttattggagtcatttttagatgatgtacttgctttccaatcagaccga
actatggaagtacgtcgatctgttgtaggattcattgaagaatcatgtaagaaagatcct
gccatacttccaagagtgatggatagtctggatttattgcttcgggatagtgttcctcaa
gtacagaagcgagtggttcaggctgcatctcaaatatatcgtggaacgctcatgtacata
gcccgaactcaacctgtgcctgctcaaatggaaaaagcttggggagccatgtgtaccatg
aagtcggagattgttaaattgattgacagtgataatgatggtattcggactcagtcagta
aaattcctcgaaggagtggtgttacttcagacctaccctgaagctgaaagtatggtgaga
gaaaatgatttcaatctcgaagatattccactaacattaaagattgtacgcagaagaaga
ttagaggaggaagcaagcatgatattccaactgttggtgaaatttcatggtgaggcccat
gttagcagtgtcaatcttatgacttgcatgggctccctcactctcattgcccgtatgaga
cctcagttcatgggaaaagttattacttgcctggaaaatttaaataaaaaacttccaccc
acactatcaaagtcacaagtgaattccgtgagaaaacacctaaaattacagcttaccaat
ttgttgaagcagccatcagctgttgattaccatccagaaattatgaagcttttggctgat
cttggatgtacccctcaggagatagcaaaaataatgcctaaggttgatgacaaatcacgg
cgcaatcacaagcgacctggtactgaaagtgccagcagcttgcataagagaccaaaatta
gaggcactttaccgaccagagccagtgactgagcagaaaaagagccactcctcaaaggcc
attcccgatgtgcctccagagttgactgagaaattcattgcagagcgtctagctcctgaa
actgtttctgaacttgttcttgcagctcttcatcaagtgcctgcatctatgccaccacac
tttccaacaagctacactccattcaaagaacctggctcgcaagctcatattcagtatctt
gccaaacttctccattcacagatgtcaggatcagcaggtcgccaagttcctcgcaaatct
ggcagagttttaacagaactagaggaggatgatttagacgaagtagctgctcctcctcca
cccaaagctgcagcccccgttgctcctgtagcagcagcactggagcctgtcttgcttcct
cctccacctcctgtggaggagctcatggaccaagatggggatgacttggagggtcctctc
ttaccccagagagaatcaaatgaacaactaatgtcagagagggagaagctcaaggaattg
actccaatgacaccaatgacaagacctctaaagcagaaagctcgtgctctcaagttggca
gagatcaccagacctttaagtcaagagatgaaaacaaaaatgtgcctctcagctgtcaag
cgtatattgaatgcagaaaaaacagcccagtttggtggtgtcaatgctattcgcagtaaa
atcattgtcacattggcctccacatataattcagatgttagaggggatattttacaattt
gttgttgatgatttacaaaataaattagatctggatcttgctatatcatggctttatgaa
gaatatagcctcatgcaaagtttcacaaggaagccagttttcaatgaggatgatggatct
gctgttaaaagatatgtgaaactcttctgcacccttgcagttcatttagctgagaaacct
gaacgagaacctctactgaagagattgtatctagaagcaccttgtattaccgaggaggct
acagatatattaaagtcacttagttgtgatgaaaccagatgttcagttggcttacaactt
ttgcaaagccttgtcatcaggcgccctcccaaacagcttacttatctgaatgcacttctt
gaacattccgcacatgacagcacagaggtccgttccaatggcatgaaatgtgttctggct
ttgtatgatgatcggtcagatctacgttctatcatagaggaatacgcaattatgtacctt
ggttttctacaattaccagcccctccagatgtattatttggtgctgaacgaggcaggccc
tctaaggctgatacttgggcagagggtccaactaaagcttgtttgtacttgtaccttgag
cttttaccacatgaacacagattgattcatgagttaaccagagtgtatgctcaaactgta
gctgatgtgaaacgaatcattttacgattgttggatgctccagtaaggggtatgggaatg
gattctccagagttgttaaagcttgttgaggagtgtccaaagggtgctgagacccttgtc
acacgagtaattcacattctcactgataaaactccaccaagtgcagaacttgtgaaacga
gtgagggagctttaccaatcaagagtttcagatgttcgtttccttataccagttttgaac
ggtcttaccaaaagggaagtcattgattctctaccaaggcttatcaagcttaatcctatt
gttgtgaaggaggttttcaatagattgttgggtaatcattcagactcatcaagtcacaac
tcacctttaactccagtcgaattgcttgtggctctccatgtgattgaccctaaaaaatgt
gagctaaagacagttataaaggctactacattgtgcttttctgagaagcaagcctatact
caagaaaacttggctattgtaatgcaacagttaatggaaatgaatccactgcccacactt
ttaatgcgtactgtcatccaatctcttgctgcttatccaaatctcagtggatttgttatg
aacatattgcaaagactcattttgaaacaagtgtggacacaacggaaggtttgggaaggc
tttataaagtgttgccaaagaactaagccacagagcttccaagtgttattacagttacca
gctcctcagttgcaagaagtccttgattcttgtccggagatgagacagcctcttctgcaa
catgtccaatcatttactgacactcaacggtcccatgtcccccaatctgtaatggatgtt
ttgactggcacaagacatgtagttcaagaggattatgatgcgcagattgcagaaccaatg
tcaccagatggacttaccattgatgtaagagaagatgctttccaggaaaattcaggaaca
tctgagcctcttcctccaggaatggattga
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integrated database retrieval system
