Flavobacterium oreochromis: JJC03_05135
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Entry
JJC03_05135 CDS
T08111
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
foe
Flavobacterium oreochromis
Brite
KEGG Orthology (KO) [BR:
foe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
foe01011
]
JJC03_05135
Enzymes [BR:
foe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
JJC03_05135
Peptidoglycan biosynthesis and degradation proteins [BR:
foe01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
JJC03_05135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM2_CERK1_LYK3_4_5
LysM3_NFP
Glyco_transf_18
DUF6359
Motif
Other DBs
NCBI-ProteinID:
QYS87302
LinkDB
All DBs
Position
complement(1028554..1030599)
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AA seq
681 aa
AA seq
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MIRKKLALNLFLLVSAFGTYAQDKIPQDSVLKPIVKRSYLDSIKSTFVVNETLDCIDNQY
IKELSNTQDIFDGIVSDIKNLDLNAKVDFDLPTDVFKERLRLLDEKSPFNIEYNPQLENL
VKNFLKNRKRSYERLMGLSQFYFPLFEEAMARYDVPLEIKYLSIVESALRSSAVSRVGAT
GLWQFMYETGKQYGLKIDSYIDERKDTFKATDAAARYMQSMFKIFGDWELVLASYNSGAG
NVSKAIRRSGGFQNFWNIKHKLPRETQSYVPAFLATMYIFEYHKEHGLVPYKPVAKHFET
DTIALKRKISFKQLASLLDMPESDIEFLNPSYKMKVIPYVTGKTNFVCLPKKKLAILASN
EEKVYAYVDHIESKREKPFIRQIKPRIIKEILETEKVVEESLVSNKIETKKPLLQKLHVV
RKGEDANVLAQKYNVAVADIKRWNRLRGIHLLRGSKIRIKYDETNTIAANTVQEPEERNQ
VVLNTPSNTSKLKTLDLVVQKESKVKNELNSSNNDTAISEHIVLQGETLYGIAKKYHLYV
SDLKKWNQVESGLVTPGDVIKLVEPKQEVLVQIDLYTVKKGDNFGKIAKAYGVTVDELLQ
WNDRTSKDIKIGEQLKIEKSIAAKVELPKKKLPFEEQKLYVVQKGDSLFKISKKYNTTVA
ELRKKNNIKENDLQPGMKIKI
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgattagaaaaaaacttgctctcaatctatttttactggtatctgcttttggaacttat
gcccaagataagattcctcaggattctgttttaaagcctattgttaaaaggtcttattta
gattctattaaaagtacttttgtagttaatgaaactttagattgtattgataatcaatat
ataaaagaattatcaaatactcaggatatttttgacggaattgtttcagatataaaaaat
cttgatttaaatgcaaaagttgattttgatttgccaacagatgtgtttaaagaaaggttg
cgtttattagatgaaaaatctccttttaatatagagtataatcctcaattagaaaattta
gttaagaattttttgaaaaaccgtaagcgatcttatgaacgtctgatgggtttatctcaa
ttttattttcctttatttgaagaagcaatggctcgttatgacgtgcctttagaaataaaa
tacctttcaatagtagaatctgcattacgatctagtgcagtatcaagagtaggagctaca
ggtttgtggcagtttatgtatgaaacaggaaaacaatacggtttaaaaattgactcctac
atagatgaacgtaaagatacttttaaagctactgatgcagccgcacgttatatgcaaagt
atgtttaaaatatttggagattgggaacttgttttagcctcttataattctggtgcagga
aatgttagtaaagccattcgtcgttctggtggtttccaaaatttttggaatataaagcac
aaattaccacgtgaaacgcaaagttatgtacctgcctttttagcaactatgtatattttt
gaatatcacaaagaacatggtttagtaccttataagcccgtggcaaaacattttgaaaca
gatacaattgctttaaaacgtaagataagttttaaacaattagctagtttattagatatg
cccgagtctgatattgaatttttaaatccttcttataaaatgaaggttattccttatgtt
acaggtaagactaattttgtttgtttaccaaagaagaaattagcaattttagcctctaat
gaagaaaaagtttacgcttatgttgatcatatagaaagtaaaagagaaaaaccttttata
agacaaattaaaccgcgtattatcaaagaaatactagaaactgaaaaagtagttgaagaa
agtttagtatcaaataaaattgagactaaaaaacctttgttacagaaacttcatgttgta
agaaaaggagaagatgcaaatgtactagcacaaaaatataatgtggcagttgctgatata
aaaagatggaatcgattgagaggtattcaccttttaagaggatcaaaaattagaattaaa
tacgatgaaacgaatactattgcagcaaatactgttcaagagccagaagaacgtaaccaa
gttgtattaaatacaccaagcaatacttcaaaattaaaaacactcgatttagttgtgcaa
aaagaatcaaaggttaaaaatgaattaaattcatctaataatgatacagctatttctgaa
catatcgttttacaaggagaaaccctttatggtatagctaaaaagtatcatttgtatgta
tctgatttaaaaaaatggaatcaagttgaaagtggattagtaactccaggtgacgttata
aaattagttgaacctaaacaagaagttttagttcaaatagatttatatacagtaaaaaaa
ggggataattttggtaaaatagccaaagcttatggtgtaaccgttgatgagttattgcaa
tggaatgatagaacatcaaaggatataaaaataggagaacaattaaaaattgaaaaatct
attgccgctaaggttgaattacctaaaaagaaactaccatttgaagagcaaaaattatat
gtagttcaaaaaggagattccttgtttaaaatttctaaaaaatacaatactactgttgca
gagttaagaaaaaagaataatataaaagaaaatgatctgcaaccaggtatgaaaataaaa
atataa
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