Flavobacterium oreochromis: JJC03_12765
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Entry
JJC03_12765 CDS
T08111
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
foe
Flavobacterium oreochromis
Pathway
foe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJC03_12765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foe03019
]
JJC03_12765
Enzymes [BR:
foe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJC03_12765
Messenger RNA biogenesis [BR:
foe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJC03_12765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
NIBRIN_BRCT_II
Cas3-like_C_2
CMS1
Flavi_DEAD
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
QYS85921
LinkDB
All DBs
Position
2666800..2668068
Genome browser
AA seq
422 aa
AA seq
DB search
MTFEQFSFHRNIVESIKEATYTKPTEIQQKAMPIILEGEDLVGCAQTGTGKTAAFAIPIL
NYLIPIVGSIKKRKYIRTVVLAPTRELALQIEESFNKYGKYTNCTTLTIYGGVSQTSQVE
KLKEGIDILVATPGRFLDLNKQGVIDINHLHHLVIDEADLMLDMGFINDVRKITKIAPEN
RQTLLFSATMPIEIREIAEEFLKKPKYVEVKSTISNSQNITQSVYFVEKSEKKQLLLRVI
KQQELVNTILFVRTKQGAENLVEFLQKNQLNCDALHGDKSQSARQKVLEDFKNKTIDLLV
ATDVASRGIDIDQLPVVINYDLPNIPETYIHRIGRTGRAGHSGIAISFCGKDEEVYWKDI
IRLLKNKVTIIEDHPFPWKSNNNKKKINQQSPTPNNHNTSKQRSGKKSRKSDNSKKNKKR
WY
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaacagttcagttttcatcgcaatattgtagagtcaataaaagaggcgact
tatacaaaacctactgaaatacagcagaaagcaatgccaattattcttgaaggagaagat
ttagtgggttgcgcacagactggaacaggaaagacagctgcttttgctattcctatttta
aattatttaatacctatagtaggttctattaaaaagagaaaatatattcgtacagttgtt
ctagctcctactcgtgagttagctttacaaattgaagagagctttaataaatatgggaaa
tacactaattgtactacacttactatttatggaggtgtctcccaaacttctcaagtagaa
aaactaaaagaagggatagatatattagtggctacaccaggtcgttttttagatttaaat
aaacaaggtgtaatagatattaatcatttacatcatttagtaatagatgaagctgatcta
atgcttgatatggggtttataaatgatgtacgaaaaataacaaaaatagcgcctgaaaat
aggcaaacactcttgttttccgctacaatgcctattgaaattagagaaattgcagaagaa
tttcttaaaaaacctaagtacgtagaagttaagtcaactataagtaatagtcaaaatata
acacaatcagtttattttgttgaaaaatcagaaaaaaaacaactcttattgcgagttata
aaacaacaagaattagtaaacaccattttatttgtaagaacaaaacaaggtgctgaaaat
cttgttgaatttttacaaaaaaatcaactaaattgtgatgcacttcatggtgataaatca
caaagtgcgcgtcaaaaagttttagaagattttaaaaataaaaccattgacttattagta
gctacagatgttgcttcaagaggaattgatatagaccaacttcctgtagttattaattat
gatttgcctaatattccagaaacctatattcatagaataggaagaacaggtagagcaggg
cattcaggtatagctatttctttttgtgggaaagatgaagaagtgtattggaaagatatt
atcaggttattgaaaaataaagtaacaataatagaagatcatccttttccttggaaatca
aataataataaaaagaaaattaatcaacagtcaccaactcccaataatcataatacgtca
aaacagcgaagtggtaaaaaatcacgcaagtctgacaattctaaaaaaaataaaaaacgt
tggtattaa
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