Formosa sp. Hel3_A1_48: FORMA_01910
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Entry
FORMA_01910 CDS
T04482
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
foh
Formosa sp. Hel3_A1_48
Pathway
foh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMA_01910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foh03019
]
FORMA_01910
Enzymes [BR:
foh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FORMA_01910
Messenger RNA biogenesis [BR:
foh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FORMA_01910
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOR25386
LinkDB
All DBs
Position
complement(188768..190030)
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AA seq
420 aa
AA seq
DB search
MTFQSLGLIEALLKAVRLQGYETPSPIQQKAIPPILEGLDVLASAQTGTGKTAGFTLPML
QILSKNPVRHRRPVRALVLTPTRELADQVFTNIKHYSKFLDLRSTVIFGGVNQNPQIKQL
RNGVDVLVATPGRLIDLENQGHLSLSQVEIFILDEADRMLDMGFKRDIDKIRSLIPSRRQ
NLMFSATFSREIKSLAQTLLKRPILVEATPENTTVEAVTQQIYRVAKEKKTKLLIKLIKD
GQWQQVLVFMRTKHGANKLCKKLETAQISAMAIHGNKSQGARTRALAGFKNRDIRVLVAT
DIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTGRAGANGVALSLVCAEETSYLASIEK
LTKQRFKKEIVEDFEPDPNASTAPPKQGGGRQRRSGGRPSNNRQGSTAGANRSNSKRRRR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacattccagtctttgggacttattgaagccctacttaaagcagttcgtttacagggc
tatgaaacaccctctccaattcaacaaaaagctatacctccaattcttgaaggccttgat
gtactcgcttcggctcagacaggaacagggaaaactgcaggatttaccctgccaatgctg
caaattttatcaaaaaacccagtccgccatcggcgtcctgtacgtgcattggtgcttacg
ccaactagagaattggccgatcaggtatttacaaacattaaacactacagtaaatttttg
gaccttcgttctactgttatttttggtggtgtaaatcaaaacccgcaaatcaagcaactt
cgaaatggagttgatgttttagtagcaactccggggcgattgattgatttggaaaatcaa
ggccatttatcactgtctcaagtcgagatctttatacttgatgaagccgatcgtatgttg
gatatggggtttaaacgtgatatcgacaaaatacgatcattgattccctctagacgccaa
aatttaatgttttcggctactttttcaagagaaataaaaagtttagcacagaccctttta
aaacggccaattcttgtagaagcaacaccggaaaacacaactgttgaagcggttactcaa
cagatttacagagtggcaaaagagaaaaaaacaaagcttcttataaaacttatcaaagac
ggacagtggcaacaagtattggtgttcatgcgcaccaaacatggcgctaataaactttgt
aaaaaacttgaaactgctcaaatttcagcaatggctattcatggaaataaaagtcaaggc
gcaagaacacgcgctttagccggttttaagaatcgtgacattcgtgttttagttgcaacg
gatattgctgcacgtggtttggatattcctttgttaccacatgtgattaattacgagctt
ccaaacattcctgaagattacgtacaccgcataggtcgtacaggtcgagcaggagcaaat
ggcgtggctttatctttagtctgtgccgaagaaacttcgtacttagcttctatagaaaaa
cttaccaagcaacgtttcaagaaagaaattgttgaagattttgaacccgatcctaatgct
tcaacagcgcctcctaaacaaggtggaggtcgccaaagacgcagtggtggccgacccagt
aataaccgtcaaggctctactgccggagctaacagatctaattctaagcgccgccgccgc
taa
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