Formosa sp. Hel3_A1_48: FORMA_04800
Help
Entry
FORMA_04800 CDS
T04482
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
foh
Formosa sp. Hel3_A1_48
Pathway
foh03030
DNA replication
foh03430
Mismatch repair
foh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
foh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FORMA_04800
03430 Mismatch repair
FORMA_04800
03440 Homologous recombination
FORMA_04800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
foh03032
]
FORMA_04800
03400 DNA repair and recombination proteins [BR:
foh03400
]
FORMA_04800
Enzymes [BR:
foh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FORMA_04800
DNA replication proteins [BR:
foh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FORMA_04800
DNA repair and recombination proteins [BR:
foh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FORMA_04800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
AOR25664
UniProt:
A0A1D7XQS7
LinkDB
All DBs
Position
complement(517574..521953)
Genome browser
AA seq
1459 aa
AA seq
DB search
MYLIFDTETTGLPKRWKAPITDSDNWPRCVQIAWQLHDAMGHCVEHQDYLILPDGFNIPY
DAEQIHGISTALANKEGEALAVVLEKFNTALAKAKFVVGQNVGFDLNIMGCEYHRMQVET
PLNSMPVLDTCTETTASLCQLPGGRGGKFKLPTLTELHQKLFDTPFAEAHNATADVEATT
RCFLELLRQGIYTADQLQVAPDYVSQFQAQNPDRVAPLGLKHINLKKSAAKLVEQTKKQE
QNAPPSTSEISTELADAPVVHLHNHSQFSILQSTISIKKLVKATADAAMPAVALTDHGNM
MGAFHFVKEIGLYNKSLAQRKQEAEAAGEVFNQKPIKPIVGCEFFVCEDHSNKSQKDNGY
QMVFLAKNKKGYQNLVKMSSMAFTDGFYYVPRIDRKIVEQYKDDLIVLSGNLYGEVPSKI
LNVGEHQAEEALLWWKAQFGADFYIELMRHGQQDEDHVNAVLINFAEKHKIKLLATNNTY
YIDQTEANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYFFKSPDEMKQLFSDLPEAI
LNIQEVVDKVESFELAREVLLPKFDIPKEFEHPSDAVEGTNHGENAYLRHLSYEGAKKRY
GTLSDEIKERLDFELQTIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYCL
WITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIVTYG
TMAAKSSIRDTARVLDLPLGDADRIAKLVPNMSKLNKIFGEDEKVLKQKFRAEDMELINQ
LLNISEGDDLEAETVNQAKVLEGSLRNTGIHACGVIITPGDITNYVPIATAKDSELYVTQ
FDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHDIELDPENFPLDDVATYELFQRGE
TVGIFQYESPGMQKHMRDLKPTVFADLIAMNALYRPGPLEYIPSFIRRKHGDEDISYDLP
EMEEFLNETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKAVLDKMKPKFIAQA
SAKGLAVEKLEKIWTDWEKFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM
NDIKQVTFFMEEAKRMRMNVLGPDVNESYYKFSVNKDNAIRFGMGAIKGVGHGAVKTIVD
ERKKEGVYRSIFDLAKRIDLRAANKKAFENLANAGGFDCFSNTHRAQYFYDEGDGVTFLE
KTIKFANKYQENKNSAQVSLFGEASEVQFPEPELPACESWGTMEKLAREKEVVGIYISGH
PLDDFRIEMENFCNGTVAYFQNMTPLINKEITFGGVVTDVQHRVSRQGKGWASFTIEDYT
NSHEFRIFGEEYLKFRHFLMLNNFVYVRSFVREGWTNRETGKKGEPRLQFNNFQLLHDVM
DAYAKKLSIQLSIKGLTEDKITEIQDLLRMHKGKHVLNFVVYDDEEELKVELKSRKQKVQ
ISQELLNELKSQNIYYKLN
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatctttgataccgaaaccacaggccttcccaaacgttggaaagcacccatc
acggatagcgataattggccgcgttgtgttcaaatagcatggcaattgcacgacgctatg
ggccactgtgtcgaacatcaagactatcttatccttccggatgggttcaacatcccatac
gatgcagagcaaattcatggaatttctacagcattagccaacaaagagggcgaagctttg
gctgttgttcttgaaaaatttaataccgcactggccaaagctaaatttgttgtggggcaa
aatgtggggtttgacctcaatattatgggctgcgaataccaccgcatgcaggtggaaacg
ccgctcaacagcatgccggtattggacacttgtaccgaaaccacagcaagtctttgtcag
ttgccaggaggtcgtggcggcaaattcaaattgcctacgcttacggagttgcaccaaaaa
ttgtttgacacgccctttgcggaagcacacaatgccaccgccgatgtcgaggccaccaca
cgttgttttttggagcttttgcgtcagggcatctataccgcagaccagttgcaagttgcc
cccgattatgtttcacaatttcaagcccaaaacccagatcgtgttgcgccgttggggctc
aagcatatcaatctaaaaaaatctgcggctaaacttgttgaacaaaccaaaaaacaagaa
caaaatgcaccgccaagcactagcgaaatttcgactgaattggctgatgctccagtggta
cacttacataaccactctcaattttcgattttacaatcgaccatcagtataaaaaaatta
gtaaaagctactgctgatgcagctatgccagcagttgcgcttaccgatcacggaaacatg
atgggggcctttcactttgttaaagaaattgggctatacaacaagtctttggcacaacgc
aaacaagaagccgaagccgcaggcgaggtttttaatcaaaagcccatcaaacccattgtg
ggctgtgaattttttgtttgtgaagaccacagcaacaaatcacaaaaagataatggctat
caaatggtatttctagccaaaaacaaaaagggttatcaaaatttggtcaaaatgtcttcc
atggcctttaccgatggcttttattatgtgccgcgtatcgaccgtaaaattgtcgaacaa
tacaaagatgatttgattgtactttcaggtaatttgtatggtgaggtaccgtccaaaatt
ctaaatgttggtgagcatcaagccgaagaagcgctgttgtggtggaaagcacaatttgga
gcagatttttatattgagttgatgcgtcatggtcagcaagacgaagaccatgtcaatgca
gttctaatcaactttgctgaaaagcataagattaaactattggcgacaaacaacacttat
tatattgaccaaaccgaggccaatgcccacgatattttgttgtgtgtaaaagatggagaa
aagcaagcaacccccattggacgtggacgaggttaccgttacggattacccaaccaagaa
tattttttcaaatcgcctgacgagatgaaacagctcttcagtgatctgcctgaagctatt
ctcaatatacaggaagtagtggataaagttgagtcttttgaacttgctcgagaagtcctg
cttccaaaatttgatattcccaaagagtttgagcatcctagtgacgcagtagagggtaca
aatcacggcgaaaatgcttacctccgtcatttgtcttacgaaggtgctaaaaaacgctac
ggaactctttcagatgaaattaaagaacgattagattttgaacttcagacgatagaaaaa
acaggttatcctggctatttcttgattgttgaagactttattcgtgaggcccgaaacatg
gatgtttctgtagggccaggtcgtggatctgctgcaggatcagtagtggcctattgcctt
tggattactaatatagatcccattaagtacgacttgctttttgagcgttttttgaatccg
gatcgtgtaagtatgcccgatattgatattgattttgatgatgaaggtcgagggcgtgtg
atggattatgtgataaacaaatacggttcaaatcaggttgcacaaattgtgacttacgga
actatggctgcaaagtcatctattagagacactgcacgtgtattggatttgccacttggt
gatgctgaccgcatagcaaagttagtccctaatatgtcaaagctcaataaaatttttggt
gaggatgagaaagttctcaaacaaaagtttcgcgccgaggatatggaacttatcaatcaa
ttgctaaatatttcagaaggagatgatcttgaagcggaaactgtaaatcaagctaaagta
ttggaggggtcgcttagaaatacaggaattcacgcctgtggggtcatcattacccctggg
gatatcaccaattatgtacccattgctacggcaaaagattcagaattgtatgtcactcag
tttgacaattcggttgtagaagatgcagggctattgaaaatggattttttgggcttaaaa
accttaacgctcatcaaggatactgtcaaaattgttaaagcaaagcatgacattgaatta
gatcctgaaaatttccctttggatgatgtggcgacttatgagctcttccaaagaggagaa
actgtaggtatatttcagtacgaatcacctggaatgcagaaacacatgcgcgaccttaaa
cctacagtgtttgctgatttaattgccatgaatgcgctatatcgcccaggacccttagag
tatattcctagttttattcgaagaaaacacggcgatgaagacatctcatatgatcttcct
gagatggaggagtttttgaacgaaacttatgggataactgtataccaagagcaagtaatg
ctactgtctcaaaaacttgctgatttcaccaaaggggaagctgatgtcttgcgcaaggcg
atgggaaaaaaacaaaaagctgttctggacaaaatgaaacctaaatttattgcacaagct
agcgctaaaggtttggctgttgagaaattagaaaaaatttggaccgactgggagaaattt
gctagctatgccttcaataaatcacattctacatgttatgcgtggattgcatatcaaaca
gcttatctcaaggcacactaccctgctgagtacatggcagcagttttgtctaataatatg
aacgacattaagcaagtgaccttttttatggaagaggccaaacgtatgagaatgaatgtc
cttgggcctgatgttaacgagagttattataaattttcggttaacaaggacaatgccatt
cgctttggtatgggcgctattaaaggcgttgggcatggtgctgtaaaaacgattgttgat
gaacggaaaaaagagggggtctaccgatcaattttcgatttagcaaaaagaattgatttg
cgtgcagccaataaaaaagcctttgagaacttggcaaatgctgggggcttcgattgtttt
tccaatacccaccgcgctcagtatttttatgatgaaggggatggggttacctttttagaa
aaaactataaaatttgccaataaataccaagaaaataaaaactctgcgcaagttagttta
tttggtgaagccagtgaagtacaattccctgagccagaattacccgcctgcgaatcatgg
ggtactatggaaaaattggctcgtgaaaaagaagtagtcggtatctatatttcagggcat
cctttggatgattttcgaatagaaatggaaaatttttgtaatggaactgtagcttacttt
caaaatatgactccactcatcaataaagaaataacctttggaggtgttgtgaccgatgtg
caacacagagttagtaggcaaggaaaaggttgggcgagtttcactattgaagactacacc
aatagtcatgagtttcgaatttttggtgaagaatatcttaagtttagacattttctaatg
cttaacaattttgtctatgttcgctcatttgttcgcgaaggttggaccaatagagaaact
ggtaaaaaaggcgaaccgcgtttacaattcaataatttccaattgttgcacgatgttatg
gatgcctatgctaaaaaattatcaattcaattgagtatcaaaggattaaccgaggataaa
attacagaaattcaggacttactccgcatgcacaaaggaaagcatgtccttaattttgtt
gtatatgacgatgaagaagaattaaaagtagaattgaaaagcagaaaacaaaaagtgcaa
atttctcaagaacttttaaatgaacttaagagtcagaatatatattataaactgaattag
DBGET
integrated database retrieval system
