Formosa sp. Hel3_A1_48: FORMA_10700
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Entry
FORMA_10700 CDS
T04482
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
foh
Formosa sp. Hel3_A1_48
Pathway
foh03410
Base excision repair
foh03430
Mismatch repair
foh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
foh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FORMA_10700
03430 Mismatch repair
FORMA_10700
03440 Homologous recombination
FORMA_10700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
foh03400
]
FORMA_10700
DNA repair and recombination proteins [BR:
foh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FORMA_10700
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FORMA_10700
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FORMA_10700
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AOR26235
UniProt:
A0A1D7XSD1
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Position
complement(1121415..1123106)
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AA seq
563 aa
AA seq
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MRWTLKPSVDEHKVQHLVDALAVDRSIAHLLVQRGIETFEEAKAFFRPKIEDLHHPFLMK
DMDKAVERIERALATNERILVYGDYDVDGTTSVALMATYLETKTDQIATYIPDRFEEGYG
VSYKGIDYAIDNDFTLIVALDCGVKAVDKVQYAKDKGVDFIICDHHRPGDKLPQAVAVLD
PKRADCTYPFKELCGCGVGFKLIHALGHNQGESLKDFLPYLDLVATAIGADIVPIVGENR
ILAYHGVRVMNASPRPGFQALIKNIKKTTLTIADVVFVIAPRINAAGRMKHGNYAVSLLK
ESNITQAELVAQEIESFNTTRRALDQNITKEALAQIEELNETECSSTVVYDSSWNKGVIG
IVASRLIEIYYRPTLVFTKSGDLLTASARSVRGFDVYEALQNCSKYIEQFGGHKYAAGLS
IKEQNFRAFKQAFENEVDKTLALHLRTPELLIDAEIQLSAVTPKFYRILKQFAPFGPQNM
APVFMTSDVVDTGYAKCVGEEDKHLKISVAQHNGEPINGIGFGLGDKLPYVANKSTFSIA
YAIDENQWNGRISLQLKLKDIKQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggacccttaagccttcagtagacgaacacaaagttcagcatttagtagatgca
ctagctgtagatcgctctatcgctcatcttttagtccaacgcggtatagaaacatttgag
gaggccaaggcatttttccgccccaaaattgaagacttacaccatccttttttgatgaag
gatatggataaagctgtcgaacgcattgaacgtgctttggccacaaacgaacgcatattg
gtttatggagattacgatgttgatggcactacttctgtagctttgatggcaacttacctt
gaaacaaaaacggatcaaatcgcgacctatatacccgatcgattcgaagagggatatggc
gtgtcctacaagggtattgattatgctattgataacgattttacgttaattgttgctttg
gattgtggagttaaagcggttgacaaggtacaatatgcaaaagataaaggagtagatttt
attatatgtgatcatcatcgccctggagataaattacctcaagcggttgccgtattagat
ccaaaaagagcggattgtacctatccatttaaggagctttgtggatgtggtgttggattt
aagttgattcacgctttgggccataatcaaggcgagtctcttaaagattttttaccctat
ttagatttagtagcaacggcaataggcgccgatattgttcctatagtaggcgaaaatcga
atattggcttatcacggggttcgcgtcatgaatgccagtcctcgcccaggatttcaggca
cttataaaaaatattaaaaaaactacgttgacaatagctgatgttgtttttgttattgca
ccccgtatcaatgcggcaggacgaatgaagcatggtaattatgcggtatcacttctaaaa
gaaagcaacataacccaggctgagcttgttgctcaagagattgagtctttcaacacaacc
cgtagagcattggatcaaaacatcaccaaagaggctcttgcacagattgaggaacttaat
gagaccgaatgttcatcaactgttgtttacgactcgtcttggaataaaggggtaatcgga
attgtggcttcaaggcttattgaaatctactaccgtccaacattggtattcacaaaaagc
ggagacttacttacagcttctgctcgctctgttcgtggatttgatgtttatgaagccttg
caaaactgcagtaaatatattgagcaatttggcgggcataagtatgcggcagggcttagc
attaaagagcaaaattttagagcattcaaacaagccttcgaaaacgaagtggataaaact
ttggcattgcatttaagaacaccagaattgcttatcgatgcagaaattcaactgagtgct
gttacgccaaaattttacagaattttaaaacaatttgcaccttttggaccacaaaacatg
gctcctgtttttatgacaagtgacgtggtagataccggatatgcaaaatgtgttggagaa
gaggacaaacacctcaaaattagcgtggctcaacacaatggagagcccatcaatggtatt
ggatttgggttgggggataaactgccttatgttgcaaataaaagcaccttcagtattgcc
tatgctatagatgaaaaccaatggaacggccgtatcagtctgcagttaaaactcaaagat
ataaagcaataa
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