Formosa sp. Hel3_A1_48: FORMA_10980
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Entry
FORMA_10980 CDS
T04482
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
foh
Formosa sp. Hel3_A1_48
Pathway
foh02020
Two-component system
foh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
foh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FORMA_10980
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FORMA_10980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foh03021
]
FORMA_10980
Transcription machinery [BR:
foh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FORMA_10980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
YOR012W_N
PolB_pipolin_C
Motif
Other DBs
NCBI-ProteinID:
AOR26263
LinkDB
All DBs
Position
1148303..1149694
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AA seq
463 aa
AA seq
DB search
MKLIQLPTQAFEQRLKQELEENPALERGKEKEEDGFDDIYSDQDYEENEKINADDINIDD
YLSDDEIPSYRLQANNHSADDESKTIPYASGTSFTQLLTDQLNTFRLENQDYEIAKFLIG
SIDDSGYIRRSLLDLTDDLAFTQNIFTDVDTLKKVLKVVQQLDPPGVGARNLQECLLIQL
QRKEQTPDTERAANMIENAFEQFTKKHYQKLLKKFDISEIELKDAILEIERLNPKPGSSF
SNNLRSTEHVVPDFTIKIIDGELELVLNGRNAPELHISKSYNEMLLGYKASKEKSRAQKE
AVLFIKQKLDAAKWFIDAIRQRQQTLLLTMSAIMHYQKAYFLSGDEEQLRPMILKDIADE
VEMDVSTISRVANSKYVDTPYGTKLIKEFFSESMTNDQGEEVSTREIKSILKTIIVEEDK
KKPWTDEKLAKILKEKGYPIARRTVAKYREQLDFPVARLRKQI
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttatacagttacctacacaagcatttgaacaacgtctaaaacaggagctagaa
gaaaatcctgctttggagcgcggtaaagagaaagaagaggatggttttgacgatatatat
tccgatcaagattatgaagaaaatgaaaaaataaatgctgatgatattaatatcgatgac
tacctgagcgatgatgaaataccttcctacagactacaggccaataatcatagtgcagat
gatgagtcaaaaacaattccttatgcctctggaacatcattcacacaactattaacagac
caactcaacacctttcgcttagaaaaccaagattatgaaatagcaaaatttctcattgga
agcatcgatgatagtggttatattcgccgatcacttttagatttaacagatgatttggcc
tttactcagaatattttcacagatgttgatacccttaaaaaggtgctaaaggttgtgcag
caactagatccgcctggcgtaggagcaagaaatttacaggaatgtttactgattcaattg
cagcgaaaggaacaaacacccgatacagagcgtgcagctaatatgattgaaaatgcattt
gaacaatttacaaaaaagcattaccagaaattactcaaaaaatttgatatctctgaaatt
gagcttaaagatgccatattggagattgaacggctcaatccaaaacctgggagttcattt
tccaacaacctacgctcgacagagcatgtcgtccctgactttacaattaaaattattgac
ggcgaattggagctggttttaaacggacgtaatgcccctgagctacatatttctaaatcc
tacaacgaaatgttgcttgggtacaaggcttccaaagaaaagtccagagcacaaaaagag
gctgttttattcattaaacaaaaactcgatgctgccaaatggtttatcgacgcaatacga
cagcgtcaacaaacactgttgctaaccatgagtgcaataatgcactaccaaaaagcctac
tttttatctggtgatgaagaacaacttcgccccatgattttaaaagatatcgctgacgaa
gtagaaatggatgtttccactatttctagagttgcaaacagcaaatatgtagacactccc
tatgggacaaaactcattaaagagttctttagtgaatcaatgaccaatgaccaaggagaa
gaagtgtctactcgagaaataaaaagtattttaaaaaccattattgttgaggaggataaa
aaaaagccttggaccgatgaaaaattagctaagatccttaaagaaaagggctatcctata
gcacgacggacggtggcaaaatacagagaacagctagattttcctgtcgcgcgcttacga
aaacaaatctaa
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