Formosa sp. Hel3_A1_48: FORMA_17380
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Entry
FORMA_17380 CDS
T04482
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
foh
Formosa sp. Hel3_A1_48
Pathway
foh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMA_17380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foh03019
]
FORMA_17380
03009 Ribosome biogenesis [BR:
foh03009
]
FORMA_17380
Enzymes [BR:
foh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FORMA_17380
Messenger RNA biogenesis [BR:
foh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FORMA_17380
Ribosome biogenesis [BR:
foh03009
]
Prokaryotic type
rRNA helicases
FORMA_17380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOR26888
LinkDB
All DBs
Position
complement(1844753..1846546)
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AA seq
597 aa
AA seq
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MNTFQQLGLEDHLLQAIKDLGFETPSEVQQKAIPTLLSEENDLVALAQTGTGKTAAFGFP
MLQKIDVNSRTTQGLILSPTRELCLQITNEIKLYGKYCKGLNVTAIYGGASITEQAKNVK
RGAQIIVATPGRMKDMISRRLVDISKIDYAVLDEADEMLNMGFFEDIKSILSHTPQEKST
WLFSATMPKEVSIIAKKFMVAPNEITVGSKNTGSKNVSHEFYLVGSRDRYAALKRLADAH
PNIFSVIFCRTKRDTQKVAEKLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGVSMVIITKSEQRKIKTIEKI
IQKGFVKKDIPDGMEICEVQLKALAHKIHDTEINHEIDPYLEEINLLFEESSKEELIKKF
FSVEFTRFFNYYKKAKNLNSPSGKDSFLEKNQDDQSARFFINIGKKDGYDWMSMKDFLRD
ALQLGQDDVFKVDVKDSFSFFNTETVNMPKVLEFFSDFKQNGRYINVEITEKKERRGNRR
FGNQKGGRSRRKDSFRSDGNGRRKERSRDNGGRSPRRSSDFKPQGNSSSRPRRNRRK
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaatacattccaacaactgggacttgaagatcatttacttcaagccattaaagacctt
ggtttcgaaactccaagtgaagttcaacaaaaagcaattccaacacttttatctgaagaa
aatgatttagtcgccctggcgcaaactgggacgggaaaaacagcggcatttggttttccc
atgctacaaaagatagatgtaaacagcagaacaacacaagggttgattttatctcctaca
agagaattgtgtttgcaaattaccaatgagataaaactgtacggaaagtattgtaaagga
ttgaatgtaactgcaatttatggaggggcaagcataactgaacaagcaaaaaatgtaaaa
agaggtgctcaaataattgtagctacccctggtcgaatgaaagacatgatcagtcgtaga
ttggtcgatatttctaaaattgactatgctgttttagatgaagcggatgaaatgcttaat
atgggcttttttgaagatatcaagtctattctttcgcataccccacaggaaaaatcaact
tggctgttttcagcaacaatgccaaaagaagtatcgattattgcgaagaaatttatggta
gctcctaacgaaattactgttggaagtaaaaatactggtagtaaaaacgtatcccacgaa
ttttatttggttggatcaagagatcggtatgctgctctaaaaagactcgctgatgcacat
ccaaatattttttctgttattttttgccgtaccaaaagggatacccaaaaagttgcagag
aagttaattgaggatggatacagcgcaggggcacttcacggagatttaagtcaaaatcaa
agagacatagtaatgaagtccttcagaaataaacaaattcaaatgcttgtcgctacggac
gttgctgctcgaggaatagatgttgatgatattacacatgtgataaattaccaattgccc
gacgaaattgaaacctatacacacagaagtggccgtacgggtcgcgccggaaagactggt
gtatctatggtaattatcaccaaaagtgaacaacgtaaaatcaaaacaattgaaaaaata
atccaaaaaggatttgtcaaaaaagacattccagatggaatggaaatttgtgaagttcaa
cttaaagctttagcgcataaaattcacgacacagaaatcaaccatgaaattgacccctat
ttagaggaaattaatttattgtttgaggaaagtagtaaagaagaattgattaaaaagttt
ttttccgtagaattcactcgattcttcaattattataagaaagcaaaaaacttaaactca
ccgagtgggaaggattcgtttttagaaaaaaaccaagatgatcaatcagctcgattcttt
ataaatatcgggaaaaaagacggttacgattggatgagcatgaaagattttttgcgagat
gctcttcaacttggtcaagacgatgtatttaaagttgacgtaaaagacagtttttctttt
ttcaatacggaaacagtcaatatgcctaaagtcttggagtttttctcagatttcaaacaa
aatggtcgttacataaatgttgaaattacggagaaaaaagaacggcgtggaaaccgtcgt
tttggaaaccaaaaaggtggccgatccagaagaaaagatagttttagatcagatggaaac
ggtcgacgtaaagaacgtagtcgagacaatggaggtcgctcaccacgaagatcatctgat
tttaaaccgcaaggcaatagctcctctcgccctagaagaaaccgtaggaaataa
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