Flavobacterium okayamense: KK2020170_06770
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Entry
KK2020170_06770 CDS
T09418
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fok
Flavobacterium okayamense
Pathway
fok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KK2020170_06770 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fok03019
]
KK2020170_06770 (rnr)
03016 Transfer RNA biogenesis [BR:
fok03016
]
KK2020170_06770 (rnr)
Enzymes [BR:
fok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KK2020170_06770 (rnr)
Messenger RNA biogenesis [BR:
fok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KK2020170_06770 (rnr)
Transfer RNA biogenesis [BR:
fok03016
]
Prokaryotic type
tRNA degradation factors
KK2020170_06770 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
DUF4143
WSLR
Motif
Other DBs
NCBI-ProteinID:
BCY27809
UniProt:
A0ABM7SAE7
LinkDB
All DBs
Position
complement(762505..764682)
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AA seq
725 aa
AA seq
DB search
MSKKPKKFGKKAKDFTNQIFKILAKEPSKSFNYKQIAAQLELTDTKSRNEIIRDLKLLKA
QDKIHETDRGKYQMVSKAEYYEGYIDMTSRKTGYFVCDELEEDVFVPFINLNHALDGDKV
KAYIYNRRSSRRPEAEVLEILERKKEEFVGVIDVQKNFAFVTTANAKMYTDIFIPKNKIG
DAEHGDVVLVKMEDWPKKADSPFGSVIKVLGKPGEHNTEIHAILAEYGLPYDFPIEVETY
AKKLDTSITEEEILNRRDMRDVLTFTIDPKDAKDFDDALSFEVLDNGNYEIGIHIADVSH
YVKEGTILDDEAYNRATSVYLVDRVVPMLPEVLSNFACSLRPHEEKYTFSAVFQLNQKAE
VLNSWFGRTVIYSDQRFAYEEAQAIIESKTSLIPAEVSLTGKEYQAPQEIVEATLKMDEL
AKILRQKRMANGAISFDKVEVKFHLNENAEPTGVYFKQSKDANHLIEEFMLLANRKVAEF
IGKQKKTFVYRIHDEPNEDKLMGLQNLIKKFGYSLNFKSKETISKSLNTLLEDVVGKKEQ
NMVDTLAIRTMSKAEYSTHNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYLDGGKSV
SEEDYEEKCKHSSQMENLAANAERDSVKYMQVKYMQDHKDQEFLGVISGVTEWGIYVEII
ENKCEGMCRIREIKDDYYVFDETQYALVGEVSKNIIQLGDEVYVKVKNADLVKKQLDFWY
IRKKE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaaaccaaaaaaatttggtaaaaaagcaaaagattttaccaatcaaattttt
aaaattttagcaaaagaaccttcaaaatcgtttaactataaacaaattgcagctcaatta
gagttaacagatactaaaagtcgcaacgaaattattcgcgatttaaaactattaaaagct
caagataaaattcatgaaaccgatcgtggtaaataccaaatggtttctaaagccgaatat
tatgaaggttatatagacatgacttcacgtaaaacaggttattttgtttgtgacgaatta
gaagaagatgtatttgttccatttataaatttaaatcatgctttagacggcgacaaagtt
aaagcgtatatatataatagaagaagttctcgccgaccagaagcagaagttttagaaatt
ttagaacgtaaaaaagaagaatttgtaggagtaatcgatgtacaaaagaattttgcattt
gtaaccactgcaaatgctaaaatgtataccgatatttttattccaaaaaataaaatagga
gatgcagaacacggcgatgttgttttagtaaaaatggaagattggcctaaaaaagccgat
tctccatttggtagtgttattaaagttttaggaaaaccaggcgaacacaatactgaaatt
catgcgattcttgccgaatatggtttaccatatgattttcctattgaagtagaaacgtat
gctaaaaaattagatacttcaataactgaagaagaaattttaaaccgtcgcgatatgcgt
gatgttttaacgtttactatagatccaaaagatgccaaagattttgatgatgctttgtct
tttgaagttttagataatggaaattacgaaataggaattcacattgccgatgtttcccat
tatgtaaaagaaggaacaattttagatgatgaagcttataatagagcaacttctgtttat
ttagtagatagagtagttccaatgcttccagaagtattgtcaaattttgcgtgttcattg
cgacctcatgaagaaaaatatacattttctgcagttttccaattaaatcaaaaagcagaa
gttttaaattcttggtttggtagaacggtaatttatagcgatcaacgatttgcttacgaa
gaagctcaagctataattgaaagtaaaacgagtttaattccagctgaagtttctttaaca
ggaaaagaatatcaagcgccacaagaaatagtcgaggctacacttaaaatggatgaatta
gctaaaattttacgccaaaaaagaatggctaatggcgctatatcattcgataaagtggaa
gttaaatttcatttaaatgaaaatgcagaaccaacaggtgtttactttaaacaaagtaaa
gatgccaatcatctaattgaagaattcatgcttttagccaatcgaaaagttgcggaattt
ataggtaaacaaaagaaaacatttgtgtatcgtattcatgacgaaccaaatgaagataag
ttaatgggattacaaaatttgatcaagaaatttggttattctttaaactttaaatcaaaa
gaaactatttctaaatctttaaatacgttattagaagatgtagtaggtaaaaaagaacaa
aacatggttgatactttagctattcgtaccatgagtaaagccgaatattcaactcataat
attggtcattacgggttagcttttgattattacagtcactttacgtcacctattcgtcgt
taccccgatgttatggcacatcgtttgttacagcattatttagatggtggaaaaagtgta
agcgaagaagattacgaagaaaaatgtaagcattcttcacaaatggaaaatttagcagct
aatgccgaaagagattctgtgaaatacatgcaagtgaaatacatgcaagatcataaagat
caagaatttttaggtgtaatttcaggtgttaccgaatgggggatttatgttgaaattatt
gaaaataaatgtgaaggaatgtgccgtattcgtgaaattaaagacgattattatgttttt
gatgaaacacaatatgcattagtaggtgaagtttcaaagaatattatacaattaggagac
gaagtatacgttaaagttaaaaatgccgatttagttaaaaaacaactagatttttggtac
attcgcaaaaaagaataa
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