Flavobacterium okayamense: KK2020170_13170
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Entry
KK2020170_13170 CDS
T09418
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fok
Flavobacterium okayamense
Pathway
fok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KK2020170_13170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fok03021
]
KK2020170_13170 (rpoB)
03400 DNA repair and recombination proteins [BR:
fok03400
]
KK2020170_13170 (rpoB)
Enzymes [BR:
fok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KK2020170_13170 (rpoB)
Transcription machinery [BR:
fok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KK2020170_13170 (rpoB)
DNA repair and recombination proteins [BR:
fok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KK2020170_13170 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
DUF7111
Tudor_1_RapA
AGA2
Motif
Other DBs
NCBI-ProteinID:
BCY28449
UniProt:
A0ABN6HVG6
LinkDB
All DBs
Position
1465686..1469498
Genome browser
AA seq
1270 aa
AA seq
DB search
MITNQTERLNFASTKNIPNYPDFLDIQVKSFKDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYTIEECIDRGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARIIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGIKKFIGRRL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILDKDNVEEIIEADVKTILLHKEDNN
AADYTIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGDV
GRYRMNKKLGLDIPMDKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNSMGFIETPYRKVENGVVDLKNEPIYLSAEEEEGKLIAQANIEMDEKGKISAERIIARE
EGDFPVVEPTVVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAP
IVGTGLERQVASDSRVLINAEGDGVVTYVDANQITIQYDRTEEERMVSFDSDEKTYQLIK
FRKTNQSTSINLKPIVRRGDKVKKGQVLCEGYATQNGELALGRNLQVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHVDDYTLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFA
KAVKDKRKRSKDKEDLDRLEMEFDVKFNELKDRLIEKLFVIVDGKTSQGVMNDLGEEVLP
KGKKFTKKMLQSVDDFAHLTKGQWTTDDHTNKLVNDLVHNYKIKLNDLQGWLRREKFTIT
VGDELPSGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVAKIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGKKLGKKFATPIFDGASLDEINALTDEAGVPRFGHTY
LYDGGTGERFHQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVMGRAKTYESIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgataacaaatcagactgaaagattaaattttgcttcaacgaagaacattcctaattat
ccagattttttggatattcaggtaaaatcgtttaaagatttttttcaattagaaacaaaa
tcagacgaaagaggcaatgaaggattatataataccttcatggaaaattttccaattaca
gatacaagaaaccaatttgtattagaatttcttgattattttattgatccaccacgatat
acaattgaagagtgtatagatagaggtttaacatacagtgtgcctttaaaagctcgttta
aaattgtattgtactgacccagaacacgaagattttgaaactattgttcaagatgtttat
ttaggaactattccttatatgactcctagtggtactttcgttatcaacggagctgaacgt
gttgtggtttctcagttacacagatcgcctggtgtattctttggacagtctttccatgca
aatggaactaagttatactctgctagaattatacctttcaaaggatcttggatagagttt
gcaactgatatcaatagcgttatgtacgcttacattgatagaaagaaaaaattaccagta
acaactttattccgtgcaattggttttgaacgtgataaggatattttagaaattttcgac
cttgcagaggaagtaaaagtttctaaatctggaataaaaaaattcattggtcgtagatta
gcggctcgtgttttaaatacatggcatgaagatttcgtagatgaagatacaggagaagtt
gtttctattgagcgtaacgaaatcattttagatcgtgatactattttagataaagacaat
gttgaggaaataatcgaagcagacgttaaaactatcttattacacaaagaagataataat
gctgcagattatacaatcattcacaatacattacaaaaagaccctacaaactctgaaaaa
gaagctgtagaacacatttaccgacaattacgtaatgctgaaccgcctgatgaagaaacg
gctcgtggaattatcgataagttattcttctcagatcaacgttataatttaggtgatgta
ggtcgttacagaatgaataaaaagttaggcttagatatccctatggataaacaagttttg
actaaagaagatatcattactatcgttaagtatttaattgagttaatcaattcaaaagct
gagattgatgatattgaccacttatcaaaccgtcgtgtaagaacagttggtgaacaactt
tctgctcagtttggtgttggtttagctcgtatggctagaactattcgtgaaagaatgaat
gttcgtgataacgaggtatttacaccaatcgatttgattaatgctaagacattatcatcg
gttatcaattcattcttcggaacaaaccagttatctcaattcatggatcaaacaaatcca
ttagctgagattacacacaaacgtcgtttatcagctttaggacctggtggtttatctaga
gaaagagcaggtttcgaggttcgtgacgttcactatacgcactacggacgtttatgtcca
attgaaactccagagggaccaaatattggtttgatttcatctttaggagtttatgctaaa
gtaaatagtatgggattcatcgaaactccttatcgtaaagtagaaaacggtgtggttgat
ttgaaaaatgaacctatttacttaagtgctgaagaagaagaaggcaagttaattgctcaa
gcaaatattgaaatggatgaaaaagggaaaatcagcgctgagcgtattattgctcgtgaa
gaaggtgattttccagtggttgaaccaacagttgtacattatacagacgttgcgccaaac
caaattgcatcgatttctgcttcattaattccgttcttagagcatgatgatgcgaaccgt
gccttgatgggatcaaacatgatgcgtcaagccgttccattattacgtcctgaagcacca
attgttggtactggtttagagcgtcaagtagcatctgattcaagagtgttgattaatgct
gaaggagatggagttgttacttatgttgatgcaaatcagattacaattcagtacgacaga
acagaagaagaaagaatggtaagttttgattctgatgaaaaaacataccaattaatcaaa
tttagaaaaacgaatcagagtacatctattaacttaaaacctattgtaagaagaggtgat
aaagttaaaaaaggacaagtgctttgtgagggatatgcaacgcaaaatggagagttagct
ttaggtagaaacttacaagtagctttcatgccttggaagggttacaacttcgaggatgcg
attgtaatttctgagaaagtagttcgtgacgatatctttacttcaattcacgtagatgat
tatacattagaagttcgtgatacgaagttaggtaatgaagaattaacgaatgatattcca
aacgtttctgaagaggctactaaagacttagatgaaaacggtatgattcgtattggtgcg
gaagttaagcctggtgatattttaattggtaaaattactcctaaaggagaatcagatcct
acaccagaagaaaaattattacgcgctatcttcggagataaagctggtgatgtgaaagat
gcatcattaaaagcgtctccttcattacatggagttgttttagataaaaaattatttgct
aaagcagttaaagataaacgtaagcgttctaaagataaagaagatttagatcgtcttgaa
atggagtttgacgttaaattcaatgaattaaaagacagattaattgaaaaattatttgtt
atcgttgatggaaaaacttctcaaggtgtaatgaacgatttaggagaagaagttttacct
aaagggaagaaatttactaagaaaatgttacaatcagttgatgattttgctcacttaaca
aaagggcaatggacaactgacgatcacactaataaattagtaaatgacttagttcataac
tataagattaaattaaacgacttacaaggatggttaagaagagaaaaattcaccatcact
gtaggagatgagttaccatcaggtattttaaaattagctaaagtttatatcgctaagaaa
cgtaaacttaaagttggtgataaaatggcaggtcgtcacggtaataaaggtatcgttgcg
aaaattgttcgtcaagaagatatgccattccttgaagatggaactccagttgatatcgta
ttgaacccacttggggtaccttctcgtatgaatatcggtcagatttatgaaacggtatta
ggatgggcaggtaagaaattaggtaagaagtttgctacgccaatctttgatggtgcatct
ttagatgaaatcaatgcattgacagatgaagctggtgtacctcgtttcggacatacatat
ttatatgatggtggaacaggagagcgtttccatcaaccagcgacagtaggtgtaatctac
atgttaaaattaggtcacatggttgatgataagatgcacgcacgttctatcggaccttac
tctttaattacgcaacaaccattaggaggtaaagctcaattcggaggtcagcgttttgga
gagatggaggtttgggctcttgaggcttatggagcttcaagtaccttgagagaaatctta
acggtgaaatctgatgatgtaatgggtagagcgaaaacttacgagtctatcgttaagggt
gaaactatgccagaaccaggattaccggagtcattcaatgtattaatgcatgaattaaaa
ggtcttggattagacatcagattagaggaataa
DBGET
integrated database retrieval system
