KEGG   Flavobacterium okayamense: KK2020170_13180
Entry
KK2020170_13180   CDS       T09418                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
fok  Flavobacterium okayamense
Pathway
fok03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:fok00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    KK2020170_13180 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fok03021]
    KK2020170_13180 (rpoC)
   03400 DNA repair and recombination proteins [BR:fok03400]
    KK2020170_13180 (rpoC)
Enzymes [BR:fok01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     KK2020170_13180 (rpoC)
Transcription machinery [BR:fok03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     KK2020170_13180 (rpoC)
DNA repair and recombination proteins [BR:fok03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      KK2020170_13180 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid
Other DBs
NCBI-ProteinID: BCY28450
LinkDB
Position
1469566..1473864
AA seq 1432 aa
MTRLKDKNTVKRFNRITIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNAEGDDLKAMDFLTEEEYLNILDTLPMENQY
LDDTDPNKFIAKMGAECIMDLLSRIDLDQLSYDLRHAANNETSKQRKTEALKRLQVVESF
REANQNRENNPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKMYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLTCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPEV
KIKGEGQTFYSVEETHIALNEGRLDLNARVKVRAKDFNENGELVYQIIQTTAGRVLFNEV
VPEAAGYINEVLTKKSLRDIIGRILGATDVPTTAAFLDDIKNMGYKFAFQGGLSFSLGDI
IIPEKKQALIADANEQVESITMNYNMGLITNNERYNQVIDVWTSTNALLTELAMKNIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGIEVTPLKKNE
EIVESLGERILGRVALHDVIDPLTSEVLVHAGEEITEAIVKRIENSPLEKVEVRSPLTCE
ATKGICAKCYGRNLATAKMTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGLSEESS
IVTKFAGRLEIEELKTVKGEDNEGNAVDIVISRSTELKLIDVKTGIVLNTHNIPYGSYIY
IKDGDTVEKGTTICKWDPYNGVIISEFTGKIEFEDIKQGESFLVEIDEQTGFQEKVISEA
RNKKLIPTLHIYGKDGQLERSYNLPVGAHLMVEDGEKIKAGKILVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVTFGKIKRGNREISIESRFGEVKKYLVKLSNQILV
QENDFVKAGTPLSDGAITPEDILRIKGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVKIEDPGDTLFLEDQLAHTSDFIVENDKLYGMKVVEDAGDSDSLKAGQIISPRQL
RDENSLLKREDKNLVVARDVVPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLEGLKENVIVGHRIPAGTGMRDYDNTIVGSKEEYNELMAAKEEFNF
NT seq 4299 nt   +upstreamnt  +downstreamnt
atgacaagattaaaagataaaaataccgttaaaagattcaatagaattacgataggttta
gcatctccagagtctattttagcagagtctagaggagaggttttaaagcctgaaacaatt
aactatcgtacacataaacctgagcgtgatggtcttttctgtgagcgaattttcggtcca
gttaaagattacgagtgtgcttgtggtaaatataaaagaattcgttacaaaggaatcgtg
tgtgaccgatgtggtgttgaagtaacggagaaaaaagttcgtagagatagagtaggacac
attaatttagtggtgcctatcgctcatatttggtatttccgttcgttaccaaacaaaatt
ggttacttattaggattaccgtctaagaaattagatatgattatttactacgaaagatac
gtagtaattcagccaggtattgcaaaaaatgctgaaggtgacgacttaaaagcaatggat
ttcttaacagaagaagagtatttaaatattttagatacacttcctatggaaaaccaatat
ttagatgatacagatccaaacaaattcatcgctaaaatgggtgctgaatgtataatggat
ttattgtctagaattgatttagaccaattgtcttatgatttacgtcacgctgcaaacaac
gaaacgtctaaacaacgtaaaactgaagcgttaaaacgtttacaagttgttgagtcgttc
cgtgaagcaaaccaaaacagagaaaataatcctgagtggatgattttaaaagtaattccg
gttattccacctgaattacgtccgttagtgccccttgatggtggtcgtttcgcaacgtct
gatttaaatgatttatacagaagagttatcatccgtaataatcgtttaaagcgtttaatg
gaaattaaagctcctgaagtaatcttacgtaatgaaaaacgtatgttacaagaagctgta
gattcattattcgataacactagaaaagcttctgctgttaaaacagaatctaacagacct
ttaaaatcattatcagattcattaaaaggtaaacaaggtcgtttccgtcaaaacttatta
ggtaagcgtgttgattattctgctcgttctgtaattgttgtaggaccagaattgaaaatg
tatgagtgtggtttaccaaaagatatggcagctgaactttacaaaccattcgttattcgt
aagttaatcgaaagaggtattgtaaaaacagttaaatcggctaagaaaattatcgataaa
aaagagccagtagtatgggatatcttagaaaatgtaattaaaggacatccagtattacta
aaccgtgctcctacgcttcaccgtttgggtatccaagcattccaacctaagttaattgaa
ggaaaagcaatccagttacacccattgacgtgtacggctttcaacgccgatttcgatggt
gaccagatggcggttcacttacctttaggtcctgaggcaatattagaagcgcaattatta
atgttagcttcacataatatcttgaaccctgcaaatggtgctcctattacagtaccatct
caagacatggttcttggtttatactatatgactaaagagcgtttatctactcctgaagtt
aaaattaaaggagaagggcaaactttttattctgtagaagaaactcacattgctttaaac
gaaggtcgtttagacttaaatgctcgtgtaaaagttagagcaaaagactttaacgaaaac
ggagaattagtttatcaaattattcaaactactgcgggtagagtattatttaatgaagta
gtacctgaagcagctggatatattaatgaggtattaacgaagaaatcacttcgtgatatt
attggtagaattttaggtgctacagatgttcctacaactgctgcattcttagatgatatc
aaaaacatgggatacaaatttgcattccaaggaggtctttctttcagcttaggtgatatt
attattcctgagaaaaaacaggctttaattgctgatgcaaatgagcaagttgaaagtatt
actatgaattataacatgggtcttattacaaataatgagcgttataatcaggtaatcgat
gtttggacatcaactaatgcattgttaactgaattagcaatgaaaaacattagagaagac
caacaaggattcaactctgtattcatgatgttagactctggagcaaggggatcaaaagaa
cagattcgtcagttaactggtatgcgtggtttgatggctaagccgaaaaaatcaactgct
ggtggtggtgaaattattgaaaacccgatcttatctaactttaaagaaggtttatcaatt
ttagaatactttatttctacacacggtgctcgtaaaggtcttgccgatacggctcttaaa
actgccgatgcaggttacttaactagaaggttacacgatgtttctcaagatgttattgtt
aactctgtagattgtggtactttaagaggaattgaagttactccattaaagaaaaacgaa
gaaatcgtagaatctttaggagaaagaatcttaggacgtgttgctttacacgatgttata
gatcctttaacttcagaagttttagttcatgctggtgaagaaattacagaagctattgtt
aagagaatcgaaaactctccattagagaaagtagaagttcgttcgccattaacatgtgaa
gctacaaaaggaatttgtgctaaatgttatggtagaaacttagcaactgctaagatgact
caaaaaggtgaggctgtaggtgtaattgctgcacagtctattggtgagccaggtacacag
ttaacacttcgtacgttccacgttggaggggttgctggaggtttatcagaagagtcaagt
atcgttactaaattcgctggacgtttagaaattgaagaattaaaaactgtaaaaggggaa
gataatgaaggaaacgcagttgatatcgttatttctcgttcaacagaattaaaattaatt
gatgttaaaacaggaatcgtattaaatacacataatatcccttatggttcttacatctac
attaaagatggtgatactgtagaaaaaggtacaactatctgtaaatgggatccatataat
ggtgtaattatttctgaatttactggtaaaattgaattcgaagatattaagcaaggtgaa
tctttcttagtagaaatcgatgagcaaacaggattccaagaaaaagtaatctctgaagct
cgtaataagaaattaatcccaactttacatatttatggtaaagatggtcaattagagcgt
tcttataatttaccagttggtgcacacttaatggttgaagacggagagaaaattaaagct
ggaaaaatcttagttaagattcctcgtcgttcttctaaagcgggagatattacaggaggt
ttaccacgtattacagagttattagaagctcgtaatccttcaaacccagctgtagtttct
gaaattgatggtgtagttactttcggaaaaattaagagaggtaaccgtgaaatttctatc
gaatctagattcggagaagtaaaaaaatacttagttaaactttcgaaccaaatcttagtt
caagagaatgacttcgtaaaagcgggaactccactttctgatggtgctattactccagaa
gatatcttaagaattaaaggaccttctgctgttcaacagtacttagtaaatgaaattcaa
gaggtataccgtttacaaggggtaaaaattaacgataagcactttgaagttgtaattcgt
caaatgatgcgtaaagttaaaattgaagatccaggagatactttattcttagaagatcaa
ttggctcacacatctgactttatcgttgaaaatgataaattatacggaatgaaagtagtt
gaagatgctggtgattctgatagcttaaaagctggtcaaatcatttcgcctcgtcaatta
agagatgaaaattcgttattaaaacgtgaagataaaaacttagtagtagctcgtgatgta
gttcctgcaactgcaactccagttctacaaggtatcacaagagcgtcgttacaaacgaaa
tcattcatttctgcggcatcgttccaggaaacaactaaagtattaaatgaagcagctgtt
gctggtaagatcgatactttagaaggacttaaagaaaacgttattgttggtcacagaatt
ccagctggtacagggatgagagattacgataacacaatcgtaggttctaaagaagaatac
aatgaattaatggcagcaaaagaagaatttaatttctaa

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