Flavobacterium okayamense: KK2020170_13180
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Entry
KK2020170_13180 CDS
T09418
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fok
Flavobacterium okayamense
Pathway
fok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KK2020170_13180 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fok03021
]
KK2020170_13180 (rpoC)
03400 DNA repair and recombination proteins [BR:
fok03400
]
KK2020170_13180 (rpoC)
Enzymes [BR:
fok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KK2020170_13180 (rpoC)
Transcription machinery [BR:
fok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KK2020170_13180 (rpoC)
DNA repair and recombination proteins [BR:
fok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KK2020170_13180 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BCY28450
LinkDB
All DBs
Position
1469566..1473864
Genome browser
AA seq
1432 aa
AA seq
DB search
MTRLKDKNTVKRFNRITIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNAEGDDLKAMDFLTEEEYLNILDTLPMENQY
LDDTDPNKFIAKMGAECIMDLLSRIDLDQLSYDLRHAANNETSKQRKTEALKRLQVVESF
REANQNRENNPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKMYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLTCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPEV
KIKGEGQTFYSVEETHIALNEGRLDLNARVKVRAKDFNENGELVYQIIQTTAGRVLFNEV
VPEAAGYINEVLTKKSLRDIIGRILGATDVPTTAAFLDDIKNMGYKFAFQGGLSFSLGDI
IIPEKKQALIADANEQVESITMNYNMGLITNNERYNQVIDVWTSTNALLTELAMKNIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGIEVTPLKKNE
EIVESLGERILGRVALHDVIDPLTSEVLVHAGEEITEAIVKRIENSPLEKVEVRSPLTCE
ATKGICAKCYGRNLATAKMTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGLSEESS
IVTKFAGRLEIEELKTVKGEDNEGNAVDIVISRSTELKLIDVKTGIVLNTHNIPYGSYIY
IKDGDTVEKGTTICKWDPYNGVIISEFTGKIEFEDIKQGESFLVEIDEQTGFQEKVISEA
RNKKLIPTLHIYGKDGQLERSYNLPVGAHLMVEDGEKIKAGKILVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVTFGKIKRGNREISIESRFGEVKKYLVKLSNQILV
QENDFVKAGTPLSDGAITPEDILRIKGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVKIEDPGDTLFLEDQLAHTSDFIVENDKLYGMKVVEDAGDSDSLKAGQIISPRQL
RDENSLLKREDKNLVVARDVVPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLEGLKENVIVGHRIPAGTGMRDYDNTIVGSKEEYNELMAAKEEFNF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgacaagattaaaagataaaaataccgttaaaagattcaatagaattacgataggttta
gcatctccagagtctattttagcagagtctagaggagaggttttaaagcctgaaacaatt
aactatcgtacacataaacctgagcgtgatggtcttttctgtgagcgaattttcggtcca
gttaaagattacgagtgtgcttgtggtaaatataaaagaattcgttacaaaggaatcgtg
tgtgaccgatgtggtgttgaagtaacggagaaaaaagttcgtagagatagagtaggacac
attaatttagtggtgcctatcgctcatatttggtatttccgttcgttaccaaacaaaatt
ggttacttattaggattaccgtctaagaaattagatatgattatttactacgaaagatac
gtagtaattcagccaggtattgcaaaaaatgctgaaggtgacgacttaaaagcaatggat
ttcttaacagaagaagagtatttaaatattttagatacacttcctatggaaaaccaatat
ttagatgatacagatccaaacaaattcatcgctaaaatgggtgctgaatgtataatggat
ttattgtctagaattgatttagaccaattgtcttatgatttacgtcacgctgcaaacaac
gaaacgtctaaacaacgtaaaactgaagcgttaaaacgtttacaagttgttgagtcgttc
cgtgaagcaaaccaaaacagagaaaataatcctgagtggatgattttaaaagtaattccg
gttattccacctgaattacgtccgttagtgccccttgatggtggtcgtttcgcaacgtct
gatttaaatgatttatacagaagagttatcatccgtaataatcgtttaaagcgtttaatg
gaaattaaagctcctgaagtaatcttacgtaatgaaaaacgtatgttacaagaagctgta
gattcattattcgataacactagaaaagcttctgctgttaaaacagaatctaacagacct
ttaaaatcattatcagattcattaaaaggtaaacaaggtcgtttccgtcaaaacttatta
ggtaagcgtgttgattattctgctcgttctgtaattgttgtaggaccagaattgaaaatg
tatgagtgtggtttaccaaaagatatggcagctgaactttacaaaccattcgttattcgt
aagttaatcgaaagaggtattgtaaaaacagttaaatcggctaagaaaattatcgataaa
aaagagccagtagtatgggatatcttagaaaatgtaattaaaggacatccagtattacta
aaccgtgctcctacgcttcaccgtttgggtatccaagcattccaacctaagttaattgaa
ggaaaagcaatccagttacacccattgacgtgtacggctttcaacgccgatttcgatggt
gaccagatggcggttcacttacctttaggtcctgaggcaatattagaagcgcaattatta
atgttagcttcacataatatcttgaaccctgcaaatggtgctcctattacagtaccatct
caagacatggttcttggtttatactatatgactaaagagcgtttatctactcctgaagtt
aaaattaaaggagaagggcaaactttttattctgtagaagaaactcacattgctttaaac
gaaggtcgtttagacttaaatgctcgtgtaaaagttagagcaaaagactttaacgaaaac
ggagaattagtttatcaaattattcaaactactgcgggtagagtattatttaatgaagta
gtacctgaagcagctggatatattaatgaggtattaacgaagaaatcacttcgtgatatt
attggtagaattttaggtgctacagatgttcctacaactgctgcattcttagatgatatc
aaaaacatgggatacaaatttgcattccaaggaggtctttctttcagcttaggtgatatt
attattcctgagaaaaaacaggctttaattgctgatgcaaatgagcaagttgaaagtatt
actatgaattataacatgggtcttattacaaataatgagcgttataatcaggtaatcgat
gtttggacatcaactaatgcattgttaactgaattagcaatgaaaaacattagagaagac
caacaaggattcaactctgtattcatgatgttagactctggagcaaggggatcaaaagaa
cagattcgtcagttaactggtatgcgtggtttgatggctaagccgaaaaaatcaactgct
ggtggtggtgaaattattgaaaacccgatcttatctaactttaaagaaggtttatcaatt
ttagaatactttatttctacacacggtgctcgtaaaggtcttgccgatacggctcttaaa
actgccgatgcaggttacttaactagaaggttacacgatgtttctcaagatgttattgtt
aactctgtagattgtggtactttaagaggaattgaagttactccattaaagaaaaacgaa
gaaatcgtagaatctttaggagaaagaatcttaggacgtgttgctttacacgatgttata
gatcctttaacttcagaagttttagttcatgctggtgaagaaattacagaagctattgtt
aagagaatcgaaaactctccattagagaaagtagaagttcgttcgccattaacatgtgaa
gctacaaaaggaatttgtgctaaatgttatggtagaaacttagcaactgctaagatgact
caaaaaggtgaggctgtaggtgtaattgctgcacagtctattggtgagccaggtacacag
ttaacacttcgtacgttccacgttggaggggttgctggaggtttatcagaagagtcaagt
atcgttactaaattcgctggacgtttagaaattgaagaattaaaaactgtaaaaggggaa
gataatgaaggaaacgcagttgatatcgttatttctcgttcaacagaattaaaattaatt
gatgttaaaacaggaatcgtattaaatacacataatatcccttatggttcttacatctac
attaaagatggtgatactgtagaaaaaggtacaactatctgtaaatgggatccatataat
ggtgtaattatttctgaatttactggtaaaattgaattcgaagatattaagcaaggtgaa
tctttcttagtagaaatcgatgagcaaacaggattccaagaaaaagtaatctctgaagct
cgtaataagaaattaatcccaactttacatatttatggtaaagatggtcaattagagcgt
tcttataatttaccagttggtgcacacttaatggttgaagacggagagaaaattaaagct
ggaaaaatcttagttaagattcctcgtcgttcttctaaagcgggagatattacaggaggt
ttaccacgtattacagagttattagaagctcgtaatccttcaaacccagctgtagtttct
gaaattgatggtgtagttactttcggaaaaattaagagaggtaaccgtgaaatttctatc
gaatctagattcggagaagtaaaaaaatacttagttaaactttcgaaccaaatcttagtt
caagagaatgacttcgtaaaagcgggaactccactttctgatggtgctattactccagaa
gatatcttaagaattaaaggaccttctgctgttcaacagtacttagtaaatgaaattcaa
gaggtataccgtttacaaggggtaaaaattaacgataagcactttgaagttgtaattcgt
caaatgatgcgtaaagttaaaattgaagatccaggagatactttattcttagaagatcaa
ttggctcacacatctgactttatcgttgaaaatgataaattatacggaatgaaagtagtt
gaagatgctggtgattctgatagcttaaaagctggtcaaatcatttcgcctcgtcaatta
agagatgaaaattcgttattaaaacgtgaagataaaaacttagtagtagctcgtgatgta
gttcctgcaactgcaactccagttctacaaggtatcacaagagcgtcgttacaaacgaaa
tcattcatttctgcggcatcgttccaggaaacaactaaagtattaaatgaagcagctgtt
gctggtaagatcgatactttagaaggacttaaagaaaacgttattgttggtcacagaatt
ccagctggtacagggatgagagattacgataacacaatcgtaggttctaaagaagaatac
aatgaattaatggcagcaaaagaagaatttaatttctaa
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integrated database retrieval system