Flavobacterium okayamense: KK2020170_13560
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Entry
KK2020170_13560 CDS
T09418
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fok
Flavobacterium okayamense
Brite
KEGG Orthology (KO) [BR:
fok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fok03016
]
KK2020170_13560 (rtcB)
Enzymes [BR:
fok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KK2020170_13560 (rtcB)
Transfer RNA biogenesis [BR:
fok03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KK2020170_13560 (rtcB)
Prokaryotic type
tRNA splicing ligases
KK2020170_13560 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCY28488
UniProt:
A0ABN6HVN3
LinkDB
All DBs
Position
1511105..1512496
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AA seq
463 aa
AA seq
DB search
MGNKLSGKDLIKLGFPKNNAINIALGQINRYRKREKKEKILTEAKQVLLHPEQFKGDGTW
GKVVEGLINPVQVKFNELKTTRAPFSIFGENEIDEQAKFQLYDALKLPVAVKGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASFFKGKDHQLQAILKDNTKFG
MSETHKVKADHEVFYREEFKTIPLVKQLLDKAYKQLGSSGGGNHFVEFGIVKLDNPLPEW
KLEAKEYVAVLSHSGSRGLGANIAKHYTYLASKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHEDIHRRLAKALGKRIVVTIENHHNFAWKEIVDGKECIVHRKGATPAAK
GQLGIIPGSMTAPGFIVMGKGNEDSLQSASHGAGRLFSRAKCKATFTQSQIKKVLADNDV
TLIGGNIDEAPMAYKNIHTVMNLQTELVDVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaactatctgggaaagacctaatcaaattaggcttcccaaaaaataatgca
ataaatattgccttagggcaaattaatagatatcgaaaaagagagaaaaaggagaaaatt
ttaaccgaagctaagcaagtattgttacatccagaacaatttaaaggagatggtacttgg
ggaaaagtggtggaaggtttaatcaatcccgttcaagtaaagtttaacgaattaaaaact
actcgagcgcctttttcaatttttggagaaaacgaaattgatgaacaagcaaagtttcaa
ttgtatgatgctttaaaattacctgtagcggtaaaaggtgctttaatgcccgatgcacat
tcaggatatggattaccaataggcggagttttagccactgataatgcggttattccgtat
ggagtaggtgtggatattggttgcagaatgagtctttctattttcgatttaccggcttct
ttcttcaaagggaaagaccatcaattgcaagcgattttgaaagacaataccaaatttggt
atgagtgaaacgcataaagttaaagctgatcacgaagtgttttatcgcgaagaatttaaa
accattccattggtaaaacaattgttagacaaagcctataagcaattaggttcgtctggc
ggaggaaatcattttgtggaattcggaattgtgaaattagacaatccgttgcctgaatgg
aaattggaagccaaagaatatgtagcggttttgtcacatagtggttcaagaggattgggt
gctaatatagccaaacattatacgtatttagcgagtaaacaatgtccgttaccaaagaat
gtacaacatttagcttggttggatttgaatacgcacgacggacaagaatattggttagca
atgaatttagcaggcgattatgccaaagcatgtcacgaagatattcaccgaagattggct
aaagcgcttgggaaacgcattgtggtgactattgaaaaccatcacaattttgcttggaaa
gaaatcgtagacggtaaagaatgtattgtacaccgaaaaggagcgacaccagctgccaaa
ggacaattgggaattattccaggttctatgacagctcctggatttatcgtaatgggtaaa
ggcaacgaagacagtttgcaatcggcttctcacggagcgggtcgtttgttttcaagagca
aaatgtaaagcaacttttacgcaaagtcagattaaaaaagtcttagcggataatgatgtg
actttgattggtggaaatattgatgaagcgccaatggcatacaagaacattcatacggta
atgaatttacaaaccgaattagtagatgtgttaggtactttcacaccgaaaattgttaga
atggatagataa
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