Flavobacterium okayamense: KK2020170_17180
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Entry
KK2020170_17180 CDS
T09418
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fok
Flavobacterium okayamense
Pathway
fok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KK2020170_17180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fok03019
]
KK2020170_17180
03009 Ribosome biogenesis [BR:
fok03009
]
KK2020170_17180
Enzymes [BR:
fok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KK2020170_17180
Messenger RNA biogenesis [BR:
fok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KK2020170_17180
Ribosome biogenesis [BR:
fok03009
]
Prokaryotic type
rRNA helicases
KK2020170_17180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CoA_binding_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BCY28850
LinkDB
All DBs
Position
complement(1888793..1890697)
Genome browser
AA seq
634 aa
AA seq
DB search
MNKFEQLGLNESLQLAIKDLGFENPSEVQEKAIPILLEKDTDIVALAQTGTGKTAAFGFP
LIQKIDAENRNTQALVLSPTRELCLQITNEIKQYSKYVKGLHTVAVYGGANINEQAKEIK
RGAQIIVATPGRMQDMINRGMVNIKNIDFCVLDEADEMLNMGFYEDITAILSDTPENKST
WLFSATMPQEVARIAREFMRKPLEITVGHKNSGNVNVSHEFYVVNGRDRYSALKRLADAN
PDIFSVVFCRTKRDTQAIADKLIEDGYNAAALHGDLSQTQRDSVMKSFRQRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGTSLVIITKSEIRKIHQIEKI
IQTKFEEKPIPSGIEICEIQLFHLANRIKDVEIDHEIDTYLPAIEEVLKDIPREELIKKV
VSVEFNRFLDYYKKSRDLTSVSISGSKGEIPTEGSVRYFINIGSRDNFDWMSLKDFLRDT
LEFGKDDVFKVDVKEGFSFFNTDAEHAEKVMETFNSIHLEGRKINVEISKNDGSRNSGRR
DHGGRGGRRDGGRDGGRREGGRDGGRRDGGRDSGRRESSARRSEGGDRKRSDRNERGGER
RRDSKPAGENSGRRSSSSDNSKGFFEKAKRSRRS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattgggtcttaatgaatcgctacagctggcgataaaagacctt
ggatttgaaaatccatcggaagtacaggaaaaggcgattcctattttattagaaaaagac
actgatattgttgctttggcacaaacaggaactggtaaaaccgcagcttttggttttcca
ctaattcaaaaaattgatgccgaaaatcgtaacacacaagctttagtactttctcctacg
agagaattgtgtttacaaattactaatgaaattaaacagtattcaaaatacgttaaaggt
ttacatactgttgctgtttatggtggtgctaacatcaacgaacaagctaaagaaattaaa
agaggagcacaaattattgttgctacccctggtcgtatgcaagacatgattaaccgtgga
atggttaatattaaaaatatcgatttctgtgtgcttgacgaagctgatgaaatgttaaac
atgggattctatgaagacattacagctattttatcagatacacctgaaaacaaatctact
tggttattttctgcaacaatgcctcaagaagtagctcgtatagccagagagtttatgcgt
aaacctcttgaaattacagtgggacataaaaactcgggtaacgttaatgtttcgcacgag
ttttatgtggtaaatggtcgtgatcgttactctgctttaaaacgtttagcagatgctaat
ccagatattttctcagtagttttttgtagaacaaaacgtgatactcaagctattgcagat
aaattaattgaagacggttacaatgctgcagcgttacatggggatttatcacaaacacaa
cgtgattctgtaatgaaatcgttccgtcagcgtcaaattcaaatgttagtagctactgat
gttgctgctcgtggaatcgacgtagacgatattacgcacgtaattaactaccaattacca
gacgaaattgaaacgtatacgcaccgttcgggtcgtactggtcgtgctggaaaatcagga
acttcattagtgattattacaaaaagtgaaattcgtaagattcaccaaattgaaaaaatc
attcaaacgaaattcgaagaaaaaccaattccttcaggaattgaaatctgcgaaattcag
ttattccacttagcaaatcgtattaaagacgttgaaatcgatcacgaaattgacacgtat
ttgccagcaattgaggaagttttaaaggatattccaagagaggaattaatcaagaaagta
gtttctgttgaattcaatcgtttcttagattattataaaaaatcgagagatttaacttcg
gtaagtattagtggttcaaaaggtgaaattccaacagaaggatcggttcgttatttcatc
aacattggttctagagataatttcgattggatgtctttaaaagacttcttacgtgataca
ttagagtttggaaaagacgacgtgtttaaagttgatgtaaaagaaggtttctctttcttt
aatacagatgctgaacatgctgaaaaagtaatggaaacatttaatagtattcacttagaa
ggaagaaaaattaatgttgaaatttctaaaaatgacggaagtcgcaatagcggaagaaga
gatcacggtggtcgtggtggaagaagagacggaggtcgtgatggcggaagacgtgaaggt
ggtcgtgacggaggaagaagagacggaggtcgtgatagcggaagacgtgagtcttcagcg
agaagaagcgaaggtggtgatagaaagcgtagtgatagaaatgaaagaggcggagaaaga
agacgcgatagtaaacctgctggagaaaattcgggaagaagaagttcttcttcagataat
tcaaaaggtttttttgaaaaagcaaaacgctcaagaagaagctaa
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