Francisella opportunistica: CGC45_02885
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Entry
CGC45_02885 CDS
T06355
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
foo
Francisella opportunistica
Pathway
foo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC45_02885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foo03019
]
CGC45_02885
03009 Ribosome biogenesis [BR:
foo03009
]
CGC45_02885
Enzymes [BR:
foo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CGC45_02885
Messenger RNA biogenesis [BR:
foo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CGC45_02885
Ribosome biogenesis [BR:
foo03009
]
Prokaryotic type
rRNA processing factors
CGC45_02885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXH32898
UniProt:
A0A345JQK4
LinkDB
All DBs
Position
complement(600646..603312)
Genome browser
AA seq
888 aa
AA seq
DB search
MKRILINSKNGEETRIATLDNGKLIDLDIESFDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPDGDNIAPLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNPDGGGISRRVEGEDRERLKKYLKELNIPKNMSVIARTACVECSFEELKHD
FDTLVELWESISQAYHRIKKPALLHKESDIIVRTIRDHLKEDVKEIIVDSKECFEDVKRQ
LNLLRQSFDVNKVKLYNEELPLFAQFGIDQQIENAYKREIRLPSGGSIIIDTAEALVAID
VNSSRATKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCEGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISQVKVMIIPNFNMESPKF
QMQRIWGTSYKSNRTSSELIEDVYNVEIPKAGKKKVAAVDLNKAIENQTTSDTQEQKPQT
NNQVNTAMQNDKKQAAITQHPKKKGFFAKLISIMFASESSAAEIELNKQTQKQQNKGQKF
QKQQQNKPQKDNDQRNERNNNDNKNERNKNRINKGAKPQKPQENKPQKDSNQRNDNNGNN
AFNNINGNDKNERNKNKSNNDKFDKKSNNRNSRSNNLNLNNAEEVVDIMQLKYQNQTAVA
KTDNVKKVISKNPEEFISVMVKDVLENYDSLKDDGATKVATQEKIKTNKYLKFDTVSVDT
QIALLDETAKLNETVEAEQTSPVTEESLSIDKIDDVTIQQAVAEQEKPIKVAKETKQASE
TKPKKEKQTAVKNNKKEKTIDKEANQIQARPEYINYSPAIDFEAQALI
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatactaataaacagtaaaaatggcgaagaaacaaggattgccaccttagat
aacggcaaactaatagatttagatatcgaaagttttgatagagaacaaaaaaaagcaaat
atctataaaggctatatttcaaggattgaaccaagtttaaatgccatctttgttaactat
ggtgaagaaaaaaatggttttttaccatttaaagaagtttcagaatattatctaaaagat
gttccagatggcgataatattgcacccttactttcagaaggacaagagctgatcgtacaa
atagataaagaagagcgtggcgataaaggtgccgcgttaactacatttattaccctggct
ggctcttatatggtattactaccaaataatcctgatggcggcggtatttctcgtcgtgta
gaaggtgaagatagagaaagattaaaaaaatatctcaaagaattgaatatccccaaaaat
atgagtgtaattgcaaggacagcttgtgttgaatgctcttttgaagaattaaaacatgat
tttgatactttagttgagttatgggagtctatttctcaagcttatcatagaatcaaaaaa
ccagcactattacataaagagagtgacattattgttagaacaataagagatcatttaaaa
gaagacgtcaaagaaattatcgttgattctaaagagtgcttcgaagatgtcaaaaggcaa
ttaaacttgctaagacaaagttttgatgtaaacaaagtcaaactatacaacgaagagtta
ccattatttgcccaatttggaattgatcagcaaatagaaaatgcctacaaaagagaaatt
cgcttaccatctggcggttctataataatagataccgcagaggcacttgtggcaatagat
gtaaactcatctcgtgctaccaaagctgaagatgtagaaactacagcatttaaaaccaac
ttagaggctgcagaagaggtagctcgtcagcttagaatcagagacttaggtggtcttgta
atagttgattttatcgatatgtctttctatccaaataggaaacaagtcgaagaaaagcta
atggaagcgctacagcaagatagagcgcgtattcaaatgtcacgcatttctaaacttgga
cttgttgagatatcaagacaacgcttaagttcttcaattaatgaaagcgtaatgcagaaa
tgcccacgttgtgaggggcatggttttatcaaaactactcaagctacggctcttaccatc
ctgcgtaaaattagagcagaagctatcaaagaagatactaacgagattcgtgttcaagtt
cccgtagatatcgctgcgtatatactaaatgagaaaagagacagtatcgttgagattgag
agaatttctcaagttaaggttatgattatccctaactttaatatggagtcaccaaagttt
caaatgcagagaatctggggcactagctataaatcaaatcgtactagctcagagttaata
gaagatgtttataacgttgaaattcctaaggctggtaagaaaaaagttgctgctgtagat
ttaaacaaggctatagaaaatcaaactactagcgatactcaagagcaaaagccacaaact
aacaaccaagtaaatacagctatgcaaaatgataaaaaacaagctgctataactcaacac
cctaagaaaaaaggcttttttgctaagctaattagtatcatgtttgcaagtgaatctagc
gctgctgaaatagagcttaataagcaaacccaaaaacaacaaaacaaaggacaaaaattt
caaaagcagcaacagaataagccgcaaaaagataatgatcaacgcaatgagcgtaacaat
aatgataacaaaaacgagcgtaacaaaaatagaatcaataaaggggcaaaacctcaaaaa
ccacaagaaaacaagccgcaaaaagatagtaaccagcgtaatgataataacggtaataat
gcctttaacaatattaatggtaatgataaaaacgaacgtaataaaaataagtcaaacaat
gataaatttgataaaaaatcaaataaccgcaatagcagaagtaataatctaaatctaaat
aatgctgaagaagttgttgatattatgcaacttaagtatcaaaatcaaacagctgttgca
aagactgataatgtaaaaaaagtgatttctaagaatcctgaggagttcatctctgtaatg
gttaaagatgtcttagaaaactatgatagtctaaaagatgatggtgctacaaaggtagct
actcaagagaaaattaaaacaaacaaatacttaaaatttgatactgtatctgtagatacg
caaatagctctacttgatgaaacagctaaattaaatgaaactgttgaagctgagcaaact
tcacctgtaacagaagaatctttaagtattgataaaattgatgatgtaacaatacaacaa
gctgtagcagagcaggaaaagccgataaaagtagcaaaagaaactaaacaagctagtgaa
actaagcctaaaaaagaaaagcaaactgctgtaaaaaataataaaaaagaaaaaacaata
gataaagaagctaatcaaattcaagctagacctgagtatataaactactcgcccgcaatt
gattttgaagctcaagcactaatatag
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