Francisella opportunistica: CGC45_04340
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Entry
CGC45_04340 CDS
T06355
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
foo
Francisella opportunistica
Pathway
foo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC45_04340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foo03019
]
CGC45_04340
Enzymes [BR:
foo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGC45_04340
Messenger RNA biogenesis [BR:
foo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC45_04340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
P-loop_SecA
HI1480
HypF_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AXH33994
UniProt:
A0A345JTQ8
LinkDB
All DBs
Position
889396..890721
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AA seq
441 aa
AA seq
DB search
MQFSDLGLNPSICSALVKKGYTSPTAIQTKAIPTILQGSDVMASAQTGTGKTAAFTLPII
QNLLDQPKAQANKIKVLVLTPTRELAAQIQEQVSLYAENTHIRYTVVFGGVSINPQMMKL
RKGVEILIATPGRLLDLYSQNAIRFDSLNTLVLDEADKMLDMGFINDLKKIHNLLPKKIQ
TLMFSATFSPEIKNLANEFLNDPQFISVDAVNTAVKKIIQKIYTLDKSNKINALIALIRQ
QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKAKQINVLVAT
DIAARGIDIVQLPCVINLDLPNVAEDYVHRIGRTARAGQDGLAISLVSADEVTSLSNIEH
LIGHLLPREELEGFEVQHNVPITSMTRKTKANKIDEVKIIAAKRANKANNKKPANHNKDF
AKKIRVKIQANKSVRKPKAKD
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcagatttaggtttaaatccttcaatatgtagtgctttagttaaaaaaggt
tacacaagcccaacagcaatccaaacaaaagctatacctactattttgcagggtagtgat
gttatggcatcagcgcaaacagggacgggaaaaaccgcagcttttacgctaccaattatt
caaaatcttttagatcagccaaaagcacaagcaaataaaattaaagttttagttttaact
ccaacaagagagttggctgcgcaaatccaagagcaagtcagtttatatgctgaaaatacg
catattcgttatacagtagtatttggcggtgtaagtatcaatcctcaaatgatgaagtta
cgtaaaggtgtggaaatattaatagccactccaggtagattacttgatttatatagtcaa
aatgcaattaggtttgatagcttaaatactttagttcttgatgaagcagataaaatgcta
gatatgggttttattaatgatttaaaaaagattcataatcttttacctaaaaaaatccaa
acactaatgttttcggcaacattttcaccagagataaaaaatttagctaatgaatttctt
aatgatccgcaatttatctcggtagatgctgtaaatactgctgtgaaaaaaataatccaa
aaaatctatactttagataaatctaacaaaataaatgctttgattgcgctgattaggcaa
caaaacttgcatcaagtactagttttctcgcgtactaaaaatggcgcaaataaaatttca
gaaaagttaaataatgctggtattagcagtagtgctattcatggtaacaaaagccaaact
gcgcgtaccaaagccttagcagattttaaagctaaacaaataaatgtcctagttgctaca
gatatagcagctcgtggaattgatattgttcaactaccatgcgtgataaatcttgactta
ccaaatgtcgctgaagattatgtccatagaataggtaggacagctagagcaggacaagat
ggtttagcaatttctctagttagtgctgatgaggtaacatcattatcaaatatcgaacat
ctaataggacatttgttacctcgtgaagagcttgaaggctttgaagttcaacataatgta
cctataactagcatgactcgaaaaaccaaagctaataaaatagatgaagtaaaaattatt
gcagctaaaagagcaaataaagctaataataaaaagcctgctaatcataataaagatttt
gctaaaaaaattagagtaaaaattcaagcgaataaaagtgttagaaaaccaaaagctaaa
gattaa
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