Francisella opportunistica: CGC45_04780
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Entry
CGC45_04780 CDS
T06355
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
foo
Francisella opportunistica
Pathway
foo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC45_04780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foo03019
]
CGC45_04780
03009 Ribosome biogenesis [BR:
foo03009
]
CGC45_04780
Enzymes [BR:
foo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGC45_04780
Messenger RNA biogenesis [BR:
foo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC45_04780
Ribosome biogenesis [BR:
foo03009
]
Prokaryotic type
rRNA helicases
CGC45_04780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Utp25_C
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXH33241
UniProt:
A0A345JRK0
LinkDB
All DBs
Position
complement(974376..976085)
Genome browser
AA seq
569 aa
AA seq
DB search
MNSETKKDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNIDLKSKDKAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGS
QIRALKKGVKVVVGTTGRVMDHIEKGTLELDNLRALVLDEADEMLRMGFIDDVRFVLSHV
SDECQRLLFSATIPVDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSD
ILVATDVVARGIDLERISHVVNYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RTLERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKDIITEIRDQLEL
DSEELLAVLTLLAQGKKTFFPREIQAKEEKPTRDNRNSRDGRRNERSERRNDQGERSKRF
DRADRKPRRAVNIDLTTYKLDVGRGNDVQPRNIVGAIANEGNIDSKHICNISIQKDYTLV
DLPANLSPKVINHLKNVWVAGKKLNLTAQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagttagggctaaatcaagatatcgtagat
actgttatcaaattaggatatgaaaaccctacaccaattcaacagtatgctattccatat
atcttatcgggtagagatgtgctaggccaagcacaaacaggtacaggtaaaacagcagca
tttgcattacctttaataaataacattgatttaaaatctaaagataaagcaccgcaagtg
ttggtattagctcctactagagaattagctatacaagtagctgagcagtttgaagcattt
gccaaaaatgtgccaaatttagatgttgcttgtatctatggtggtcaagaatatggttca
caaattagagcattaaaaaaaggtgtcaaagtagtagtaggtaccaccgggcgtgtcatg
gatcatattgaaaaaggtacgctagagcttgataacctaagagcactagtcttagatgaa
gctgatgaaatgcttagaatgggctttattgatgatgtaagatttgtcttaagtcatgtc
tctgatgagtgccaaagattacttttctcagcaacaattccagtcgatattgctgatatt
atccaagaatatctaagaaacccttgtaagatacaagtaaaagctaagacaaaaactgcc
aacacagttacacaaaaatttattgtaataaaaggctttagaaagatagatgctttagat
agattgcttgagacagaagaaactgatggtgttattatctttgttaagactaaaactagc
acgattgaagtagcagataacttaaaggcgctaggctacaaagtggctgctataaatggt
gatatgcaacaatcgcagcgtgaatatattgttgatcaatttagaagtgctaaatcagat
atccttgttgctacagatgtagtagctagaggtatagatcttgagcgtattagccatgtg
gttaactatgatatgcctaatgatacagatacttatgtacataggattggccgtacaggg
agagcagggcgtgaaggtacatcaatttctttagtaccactaaaagaaatgagattcttg
cgtacccttgagagatttactggctcaccaatgcaagaagtatttatgccaagtgccaaa
gatttagcccaaagtagggtagagcacttcaaagctagaataatttcagcattagataaa
aataaatctttagataagtataaagatattattaccgagatccgtgatcagttagaactt
gattcggaagaacttttagctgttcttacgctattagctcaaggtaaaaaaactttcttc
ccaagagagatccaagctaaagaagaaaagccaactcgtgataacagaaattctagagat
ggcagacgaaatgaaaggtctgagcgtagaaatgatcaaggcgagagaagtaagcgtttt
gatagagcagatagaaaaccgcgtcgtgctgtaaatattgatctaactacatataagcta
gatgttgggcgtggtaacgatgttcaaccgagaaatatagttggagctatagctaatgag
ggtaatattgacagtaaacatatctgtaatatttctatccaaaaagattatacattagtt
gatttaccggcgaacctttcaccaaaagttataaatcatctaaaaaatgtttgggttgct
ggtaagaagttaaaccttacagctcaataa
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