Francisella opportunistica: CGC45_07765
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Entry
CGC45_07765 CDS
T06355
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
foo
Francisella opportunistica
Pathway
foo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
foo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC45_07765 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foo03021
]
CGC45_07765 (rpoC)
03400 DNA repair and recombination proteins [BR:
foo03400
]
CGC45_07765 (rpoC)
Enzymes [BR:
foo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC45_07765 (rpoC)
Transcription machinery [BR:
foo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC45_07765 (rpoC)
DNA repair and recombination proteins [BR:
foo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC45_07765 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXH33765
UniProt:
A0A345JT30
LinkDB
All DBs
Position
complement(1588839..1593092)
Genome browser
AA seq
1417 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFETYIVTDPGMTPLEKKQLLTDEEYTEALENYGYEFEASMGA
EAIRDLLADTDIESEIELLQAEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGHATTIKQAKRMVELEEAVVWDILEIVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGALGEGKLFSSYEDVSRAYNSGNI
DIHAKIKLRIDRQVFDTKSNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPDTKEAKIEEAEKEVK
HITEQYQSSLITENERYNNIINIWSKTSDDVGASMMDAISKDTITVNGETKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVALVERALGRT
LAADVVTEKGVILLEAGTLLDENLVELLDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKEGQEIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKNVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKVVDEKG
NELKTIPLAVGAVLNVADDSKLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSKGDVLAD
GPTDPHDLLKYKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVVLDEGDS
KFVKEENVELVRILEENDKLRKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVL
TEASINSQVDNLRGLKENVLIGRLIPTGTGLAVRKESSKIEKMREELGVEDNMMFTDLSS
FKPEEISFDSIQSEKEDKDINEDIEESLRNALESLDF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaattacaatagtaaaaagtttgatattattaaaata
tctctagcatctcctgaggttattcgttcatggtctcatggtgaagttaaaaaaccagaa
actataaactatagaacatttaaacccgaaagagatggtttattctgtgctaagatattc
ggcccgataaaagactatgaatgtttatgtggtaagtacaaaagacttaagcaccgtggc
gtagtatgtgagcgttgtggtgttgaagtagaacaagctaaagtaagaagagaaagaatg
gggcatattgatttagtatgtcctgttgtgcatatttggtatctgaagtctttaccttct
agaattggtttattcttagatatgccattaaagaatgttgagaaggttttgtactttgag
acttatatagttactgatccgggtatgactccattagaaaaaaaacaacttcttacagat
gaagagtatacagaagcactagagaattatggctatgagtttgaagcttctatgggtgct
gaagctattagagatttattggcagatactgatattgagtcagagattgagttacttcaa
gctgagtatgaagaaagtaaatctacagctaagaaagaaaaagctatcaagagattaaga
cttcttgagacttttcaagcttctggtaataagcctgagtggatggtgatgaccgtatta
ccagtattgccaccagatttaagaccattggtgccgatcgagggtggtaggtttgctact
tctgatcttaatgatttatatcgtagagtaattaatagaaacaatagacttaaaaagcta
ttagatctaaatgctcctgatatcattgtcagaaatgaaaagagaatgttacaggaagca
gttgatgctttattagacaatggtagacgtggtagagcagtaacaggctctaacaaaaga
cctcttaaatcattagcagatatgattaaaggtaagcaaggccgtttccgtcaaaactta
ttaggtaagcgtgttgattactctggtcgttcggtgattacagtaggcccatcgcttaga
ctacatgagtgcggtttacctaagaagatggcactagagttatttaagccatttgtatac
tctaagctaagattaggcggtcatgcaacgactatcaaacaggccaagagaatggttgag
cttgaagaagcagtggtatgggatattttagagattgtaattaatgagcatccagtactg
ctaaaccgtgctcctacactacatagattaggtattcaagcgtttgagcctaagcttatt
gaaggtaaagctatacagttacatccactagtttgtgcggcgtttaacgctgacttcgat
ggtgatcaaatggctgttcacgtacctttaacggttgagtctcaactagaagctagagtg
ctgatgatgtcaacaaataacatcttatcacctgcatctggtcaacctattattactcct
actcaagatattgtattaggtctatactatatcactagagaaaaagaaggggcgcttggc
gagggtaaattattctctagttatgaagatgtaagtagagcttataactcaggtaatata
gatatccatgctaagattaaactaagaatagatagacaagtatttgatactaagagtaac
acttataatgagaaaggagtagtcaatactactgttggtagagcccttctactaaatata
ttacctgaaggattatctttctccttactaaacaaagtgttagttaagaaagaaatttct
aaaattattaaccaggcatttagagtgttaggtggtaaggctacggtagttttagctgat
aaattgatgtatgcaggttttaaatattcaactttatctggtgtatctgttggtgttgat
gatatgactatccctgatactaaagaagctaagattgaggaagcagaaaaagaagttaag
cacattacggaacagtatcagtcctcattaattactgaaaatgaaagatataataatatc
attaatatttggagcaagacctctgatgacgttggagcttcgatgatggatgctatatct
aaagatacaattactgttaatggtgagacaaaagaaatagagtcatttaactcagtttat
atgatggctaaatctggtgcgaggggttcttataatcagatgagacaattagctggtatg
cgtggtctaatggcaaaaccagatggtacgatgattgagactgcgattacggcaaacttt
agagaaggtctgtcagtattgcaatactttacatctacacacggtgcgcgtaaaggtcta
gctgatacagctcttaagacagctaacgcaggttatctaacgcgtagactagttgatgtg
gctcaagatttagttgttattgaagaagactgtggcactgatgatggtctaatgttctca
gctatcgttgaagatggtgaagtcaaagttgctcttgtagagcgtgctttaggaagaact
ttagcagcagatgttgttactgaaaaaggagttatattactcgaagcaggtactctatta
gatgaaaatcttgttgagttacttgatgataacggcattgatatgatcaaggtcagatca
ccaataacttgtaaaacgcgtagagggttgtgtgctaagtgttatggtcgtgacctggct
cgtgagagaaaggtcaatgttggtgagtctgtcggtgtgattgcagcacaatcaattggt
gagccaggaacacagttaacaatgagaacattccacacaggtggtgctgcgtctctaggt
attacagtttctgacatcaaagttaagactgctggtaagattaagtttaagaatattaga
actgtaaccaataaagaaggtcaagaaattgttatatcaagagcaggtgagatcattgtt
tctgatactatgggtagagtaagggagcagcataagattcctatgggtgcagttgttcct
ctagctagtggtaaaaatgtagagattggtgatgtgattgctacatgggatccgcatgca
cagccattaattacagatgtagctggtaaagttgttcttgaagatgtcatagatggtata
acatctaagcatacttatgatgatctaactggtcaacaaactattgagataacttcgata
tcacaaagaacaacatctaaaaacttaaaaccagtagttaaggttgttgatgaaaaaggt
aatgagcttaaaacaatacctctagcagttggtgcggtgttaaatgttgctgatgactct
aagctagaagttggtgatgtcgttgccaagattcctttagaaggttctaagaataaggat
attactgggggtcttccgcgtgttgctgaactttttgaagctagacgtcctaaagatgca
gcaatactttctccatgtgatggtatggttagacttggaaacagagacactaaagagaag
cagagaattgaaattatagataagaatggtcatattgtggaagaaatattactacctaag
tctcgtcatttagtagtctttgacggtgaacaagtttctaaaggtgatgttttagctgat
gggcctactgatccacatgatcttcttaagtacaaaggccttgaggaatttgctgattat
atccttattgaagcacagtctgtatatcgtatgcagggtgttgtgatcaatgataagcat
attgagacaattgtaagacaaatgttgagaaaagctgtggttcttgatgaaggtgatagt
aagtttgttaaagaagagaatgttgagctagtaaggatacttgaagagaatgataaattg
cgtaaacaaggtaaaaaagaagtggagtatgagcttgtcttaatgggtattacacgttct
tctttatctacagagtcattcttgtcagctgcttctttccaagaaacaacaagagtactt
actgaggcttcgataaattcgcaggttgataatttaagaggacttaaagaaaatgttctt
atcggtagattaataccaacaggtactggcctagcagtaagaaaagagtcatctaaaatt
gaaaaaatgcgtgaagagctaggggttgaggataatatgatgtttactgatttatcatct
tttaagcctgaagaaatttcttttgacagtatccaatctgaaaaagaagataaagatatt
aatgaagatattgaagagtcactaagaaacgctcttgagtctttagatttctaa
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