Francisella opportunistica: CGC45_07770
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Entry
CGC45_07770 CDS
T06355
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
foo
Francisella opportunistica
Pathway
foo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
foo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC45_07770 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
foo03021
]
CGC45_07770 (rpoB)
03400 DNA repair and recombination proteins [BR:
foo03400
]
CGC45_07770 (rpoB)
Enzymes [BR:
foo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC45_07770 (rpoB)
Transcription machinery [BR:
foo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC45_07770 (rpoB)
DNA repair and recombination proteins [BR:
foo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC45_07770 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
AXH33766
UniProt:
A0A345JT31
LinkDB
All DBs
Position
complement(1593153..1597229)
Genome browser
AA seq
1358 aa
AA seq
DB search
MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTADAAKGRVHSGLEIVLKQSF
PVESKNGQYELHYVNYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIVE
DIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGAFSARIIPYR
GSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSDSKTITFNSKGFALR
LDNLSNMKGELLKFDIIDDQEKVIVKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVA
KDIVNEATGEVIAYANDDITESLLEACAEIGMLELEVIDFITTERGRYISDTLKYDLTRN
TDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGADKVSKDI
YTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE
SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGG
LSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVDG
KVTNEIEYLSAIDEDNYVIAQASTKLDENNHFVEDLIQCRSGGEAIFTESSRVQYMDVSA
KQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGIEKIVARDSGNCII
ARNAGEVAEVDSNRIVIKVDTEKSKTSNLVDIYSLTKFKRSNKNTCINQRPIVNVGDKVE
AGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTC
VARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVESGDILVAKITPKAEQQLTPE
ERLLRAIFNEKASNVADSSLRMPSGTTGTVINVQVFENDKGGKSKRALKIEKELIDKARK
DFDEEFAVIESVVKSSIEQDVIGAKIQKAKGLKKGAILTKEFLEKLPFAKWLEISFEDEK
LEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKM
AGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGK
KIEKTLEKTKKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCENLKGGVPIATPVFD
GAKEEDIKSLLKIGGFATNGQMKLFDGRTGKSFDRDVTVGYMYMLKLDHLVDDKMHARST
GSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNI
VDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactcatacgctgagaaaaaaagaattcgtaaagagtttggggttcttcctcat
atcttagatgtgccatatttactttctattcaaacagagtcatacaaaaagttcttgact
gcagacgcagcaaaaggaagagttcactctggacttgaaatagttttaaaacagtctttt
cctgttgagagtaaaaatggtcaatatgaacttcactatgttaattatcaaattggtgag
cctacctttgatgaaactgaatgccaggttcgtggtgctacttatgacgcaccattaaat
gtgaagttaagattagttgtatataataaagatgctcttccaaatgagaaaattgtcgaa
gacattagagaagagtatgtatacatgggcgatattccgctgatgacaactaatggtact
tttatcattaatggaacagaaagggtagtggtttctcagttgcatagatcacctggggtg
ttctttagtaaggatgactcggaggaaggagcattctcagcacgtattattccatataga
ggttcatggcttgatttcgaatttgactcaaaaggtattatatgggctaggattgacaga
aaaagaaaattctgtgctacagttattttaaaagctctgggctatacccaagagcaaata
ttagagaatttctctgatagtaagacaattacctttaacagtaaaggttttgctcttagg
cttgataacctttcaaatatgaagggtgagctacttaaatttgacatcatcgatgatcaa
gaaaaagttatcgtcaaaaagaataaaaaattaacttcaagagacattaaaaaaattaaa
gatgctggggttgactctgttgcaattgattttgatttagtaagcactcttagagtagca
aaagatatcgttaatgaagctactggtgaagttatagcttatgcaaacgatgatatcaca
gaaagtttattagaagcatgtgcagagattggcatgcttgaacttgaggttattgatttt
ataaccacagaaagaggcagatatatatctgatactctaaaatatgatcttacaagaaat
actgatgaagctcttgttgaaatatataaagttttaagaccaggtgatcctcctgctgca
gcttcagttaaggctttatttgaaggtttattctttatcgaaagtagatatagtctttct
gatattggtagaatgaaattaaatgccagattaggtgcggataaagtatctaaagatatc
tatactttagaaaatagtgatattgttggtgtaattgaggagcttataaatattcgtgat
ggtaaaggtaaagttgatgatatcgaccacttaggcaatagacgtgtgcgttctgttggt
gagatggttgagaaccagtttagaataggactttatcgtgttgaaaaaggtattcgtgaa
agtatgtctttggtacataaagataaacttatgccaaaagatattgttaactctaagcca
attacagcagcaattaaagaattctttacttctggtgctttatcacaatttatggatcag
gataacccgttatcagaagtgacacacaaaagaagaatatctgccctaggcccaggtggt
ttatcacgtgatagagctggttttgaggtgcgtgatgttcacgcgacacactatggtaga
ttatgtccaattgagactccagaaggtccaaacattggtctgattaactcgttagcaagt
tatgctcgtgttaatgactatggtttcttagaggcaccatatagaaaagttgttgatggt
aaagttacaaatgaaatcgagtacttatctgccatagatgaagataattatgtaattgca
caagcgtccactaaacttgatgaaaataaccactttgttgaagaccttattcagtgtcgt
tctggtggtgaggcgatatttactgaatcaagtagggtacagtatatggatgtttctgct
aagcagatggtttcagcagctgcagctcttattcctttccttgagcatgatgacgctaac
agggtattgatgggcgcaaacatgcaacgtcaagctgtaccaactcttaaatctgagaag
cctttagttggtacaggtatagagaagattgttgctagagattctggtaactgtattata
gcaagaaatgctggtgaagtagccgaagtagattctaataggatcgttattaaggttgat
actgaaaaatcaaaaactagtaatttagttgacatttacagtctaactaaatttaaacgc
tcaaataaaaatacttgtattaaccagcgtccaatagtaaacgttggtgataaagtagaa
gctggtgatattttagctgatggttttgcgactgattttggtgagttatctttagggcat
aatttgatggttgcattcatgccatggaatggttataactttgaggattcaatcttacta
tctgaaagaatagtaaaagatgataagtatactagtatccatattgaagaatttacatgc
gtggctcgtgatactaagcttggccctgaagagataacagcagatatcccaaatgttagt
gagtcaagtttagcgaaacttgatgaatcaggtattgtgcatattggtgctaatgttgaa
tctggtgatatcttagtggcgaaaattacaccaaaagcagaacagcaattaactccagaa
gagagactacttagagcaatctttaatgaaaaagcatctaatgttgctgatagttcatta
agaatgccaagtggtacaactggtactgtgattaatgttcaagtatttgagaatgacaaa
ggtggtaagagtaagagagctcttaaaattgaaaaagaactaatcgataaagctcgtaag
gactttgatgaggagtttgcagtaattgaatctgtagttaaatcatcaattgagcaagat
gtaattggtgctaaaattcaaaaagcaaaaggccttaaaaaaggcgctatccttaccaaa
gagttcttagagaagttaccatttgctaagtggttagagatttcttttgaggatgagaaa
cttgaagagaaagttcaaaacgctagagagtattatgaagaagctaaaattgctatagac
gctaaatttgaagctaagaaaaaatctattactcaaagtaatgaattatctccaggtgtg
cttaagactgttaaggtttttgttgcgattaaaaagcgtattcagccaggtgataaaatg
gctggtcgtcacggtaacaaaggtgtggtttcgcgtgtactacctgttgaagatatgccg
tatatggaagatggtactcctgttgatgtttgtctaaaccctctaggtattccatcgcgt
atgaatatcggacagattttagaggcacacttaggtttagcttcttacggattgggtaag
aagatagaaaaaactcttgagaaaactaaaaaagcagcggagctaagaaagactctagag
gaagtatataatagcgttggtgataagaaagttaatcttgaggctttaaacgacgaagaa
atattaactctttgtgaaaacctaaaaggcggcgtacctattgctactccagtatttgat
ggtgctaaagaagaagacatcaaatcactactaaaaataggtggttttgcaactaatggg
cagatgaagctttttgatggtcgtactggtaagtcttttgatagggatgtaacagttggt
tatatgtatatgctaaaactagatcacttagtagatgataagatgcatgctagatcaact
ggttcatatagcctagttacgcaacagccattaggtggtaaagcacagtttggtggacaa
agattcggtgagatggaagtttgggcattacaagcatatggtgctgcttatacattaaga
gagatgttaacagttaagtcagatgacatagcaggtagatctaaaatgtataagaatata
gttgatggtaaattaactatgaatgtagatgttccagagtcattcaatgttttaaggaat
gaagttagagcattgggtatagatatggattttgactattcatctgaggaagagtaa
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integrated database retrieval system
