Formosa sediminum: FNB79_04485
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Entry
FNB79_04485 CDS
T06103
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fop
Formosa sediminum
Pathway
fop03410
Base excision repair
fop03430
Mismatch repair
fop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FNB79_04485 (recJ)
03430 Mismatch repair
FNB79_04485 (recJ)
03440 Homologous recombination
FNB79_04485 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fop03400
]
FNB79_04485 (recJ)
DNA repair and recombination proteins [BR:
fop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FNB79_04485 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FNB79_04485 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FNB79_04485 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peptidase_S55
LsmAD
Motif
Other DBs
NCBI-ProteinID:
QDO93262
UniProt:
A0A516GP06
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All DBs
Position
1004477..1006165
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AA seq
562 aa
AA seq
DB search
MRWTIKPKPESHKVKALQDALQIDELTAFLLLQRGIETFEDAKSFFRPNLNELHDPFLMK
DMDKAVARIEQALETGENIMVYGDYDVDGTTSVALMSSYLRTRQENVVTYIPDRYDEGYG
VSYKGIDFAHDNEFTLIVALDCGIKAIDKVAYAKEKGIDFIICDHHRPGAEIPDAAAVLD
PKRDDCEYPYKELCGCGVGFKLIQALSSKQGFTIEDLGEYLDLVATAIGADIVPITGENR
ILAYYGLQIINENPRPGIKAILNQVDKTEFTITDVVFIVAPRINAAGRMKHGTYAVQLLT
EMDEKQAETYAAEIESFNLDRREADREITIQALNQIEELKEQDRYTSVVYQDDWHKGVIG
IVASRLTETYYRPTLVFTKSGDKLAASARSVSGFDVYNALEACSEHIEQFGGHKYAAGLT
LLPEHYDAFKQAFEDVVSQTIDPKLLSPEIKIDAKINLEDITPKFYRILKQFAPFGPGNM
TPVFMTEAVVDTGYGKCVGKDEDHLRITVKQGQVQPIVCIGFGLGAKIDAVSTTKPFDVV
YTIDENHWNGITSLQLKLRDLK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggaccataaaacccaaaccagaatctcataaagtaaaagcattacaagacgcg
cttcaaatagatgaattaacagcatttttattattgcaacgtggtattgagaccttcgaa
gatgctaaatctttttttaggcctaatcttaacgaattgcacgatccgtttttaatgaaa
gatatggacaaagctgtggcgcgtatcgagcaagctttggaaactggtgagaatattatg
gtgtatggcgattacgatgtagatggtaccacctctgtagcgttaatgagttcgtatttg
cgtacccgtcaggagaatgtggtaacctatattccagatcgctacgacgaaggttacggt
gtatcttataaaggtatcgattttgctcacgataacgagttcacccttatagttgcgtta
gactgtggtataaaagcgattgataaagtcgcttatgctaaagagaagggcattgatttt
attatttgcgatcaccaccgtccaggcgctgaaattccagatgcagcagcagttctggat
cctaaacgggacgattgtgagtatccgtataaagaattatgcggttgcggggttggcttt
aaactcattcaagccttatcgtctaaacaagggtttaccattgaagatttaggtgaatat
ttagatttagtggctacagccataggtgccgatattgtgcctattactggcgaaaataga
attttagcatactacggacttcaaattattaacgagaatccgagaccaggcattaaggcc
attttaaatcaggttgataaaaccgaatttaccattacagatgttgtttttattgtagcg
cctagaattaatgctgccggacgaatgaaacacggaacttatgccgtgcagttgcttacc
gaaatggatgaaaagcaagctgaaacctatgcggcagaaattgaaagttttaatttagac
cgtagagaagccgatagagagattactatacaagctttaaatcagattgaagaattaaaa
gagcaagaccggtatacttctgtagtgtatcaagacgattggcataaaggtgtaatagga
attgttgcctctagattaaccgaaacctattacagaccaactttagtgtttactaaaagt
ggcgataaattggcggcttcggcacgctccgtcagtgggtttgatgtgtataatgcttta
gaagcttgtagcgaacatattgaacagtttggcggacataaatacgcggccggtttaacc
ttgcttccagaacattatgatgcttttaaacaagcttttgaagatgtggtgtcccaaact
atagatcctaaattattatcacccgaaattaaaatagatgccaaaattaatttagaagac
atcactcctaagttttatcgtattttaaaacaatttgcgccgtttggtcccggaaatatg
actccggtttttatgacggaagctgttgtagatacaggttacggcaaatgtgttggtaaa
gatgaagatcatttgcgtattacagtaaaacaaggacaagtgcaacctattgtatgcatc
gggtttggtttaggagctaaaattgatgcggtttctacaacaaaaccttttgatgtggtg
tatactattgatgaaaatcattggaatggaataacgagcttacagctaaaacttagagat
ttaaaataa
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