Formosa sediminum: FNB79_05935
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Entry
FNB79_05935 CDS
T06103
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fop
Formosa sediminum
Pathway
fop03030
DNA replication
fop03430
Mismatch repair
fop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FNB79_05935 (dnaE)
03430 Mismatch repair
FNB79_05935 (dnaE)
03440 Homologous recombination
FNB79_05935 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fop03032
]
FNB79_05935 (dnaE)
03400 DNA repair and recombination proteins [BR:
fop03400
]
FNB79_05935 (dnaE)
Enzymes [BR:
fop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FNB79_05935 (dnaE)
DNA replication proteins [BR:
fop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FNB79_05935 (dnaE)
DNA repair and recombination proteins [BR:
fop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FNB79_05935 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
HHH_3
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
QDO93536
UniProt:
A0A516GPS3
LinkDB
All DBs
Position
1354281..1358669
Genome browser
AA seq
1462 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPISDSDNWPRCIQIAWQLHDELGNCIEHQDYLVKPEGFNIPY
DAEKIHGISTELAEEQGISLAEVLEKFNIALSKTKFIVGQNVGFDVNIMGAEFHREDVTN
ALQELPVLDTCTEITANLCQIPGGRGGRFKLPTLTELHQFLFNVPFGEAHNATADVEATT
RCFFELIRRKQYTVEALDVAPDYFERFNKANPQEIQLIGLKHINLKKASDKIRERLQKTQ
STDLSAAEIKQNISDLSEVNFAHLHNHSQFSVLQSTISIPNLVAAAAKQNMIGVALTDHA
NMMGAFHFVRAVINHNKNVQAKNEEAVAAGKAPTLNEMKPILGCEFFVCEDHLDKSRKDN
GYQIVIIAKNKNGYHNLAKLSSAAFTDGFYYVPRIDKKLIQQYKEDLIVLTGNLYGEVPS
KVLNVGENQAEEALIWWKEQFGDDLYVELMRHNQEDENRVNPVLIELAKKHNVKLIATNN
TYYVDKKDANAHDILLCVRDGEKQSTPIGRGRGYRYGMPNQEYYFKTSDEMKSLFKDIPE
AIINIQEVVNKIEIFELARNVLLPKFDIPEEFQHPEDEVDGGKRGENAFLRHITYKGAKI
RYGEELSPEVIERLDFELSVIEKTGYPGYFLIVEDFIRAARQMDVSVGPGRGSAAGSVVA
YCLWITNIDPMLYNLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSNQVAQII
TYGTMAAKSSIRDTARVLDLPLFEADRIAKLIPNMSKLNKIFGLDEKGLKEKFRAEDLEK
VNELISLADGKNLEADTLNLARRLEGSVRNTGIHACGVIITPDDITKFVPVSLAKDSDLY
VTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHDIDLDPENFPLDDVKTYELFQ
RGETIGVFQYESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIRRKHGEEEIEY
DLPAMEEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFI
NQASEKGHDPKKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLS
NNMNDIKQVTFFMEECKRMKLDVLGPDVNESFYKFSVNDDYAVRFGMGAVKGVGHGAVKT
IVENRKKDGPYKSIFDLAKRIDLRAANKKAFESLALAGGFDCFQDTHRAQYFQDEGDGVT
FLEKAIKYGSKHQENENSAQVSLFGEASDVQIEEPLVPPAEDWGTMEKLAREKEVIGIYI
SGHPLDDFKIEMKNFCNANLSMLRNLEACLNAELTFGGVITDVQHRVSKMGKGWALFTII
DYNDSYEFRIFGEDYLKFRHFFVVNSFVHVKVFVREGWVNKDTGKKSEPRIQFNSFQLLH
DVMDQYAKKLSIQLNIANLTETKVSNLKTLFDNHVGTKLLNFLVYDQEDKVKLPMVSRTQ
KITISQELLQALDREEVYYKLN
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatattcgacaccgaaaccacaggtttaccaaagcgttgggatgcccctatt
agcgattcagacaattggccaagatgtatacaaattgcttggcaattacacgatgagctt
ggaaactgtatagagcatcaggattatttggttaaacctgaaggatttaatattccttat
gatgcagaaaaaatacatggcatttctacagaacttgcagaggagcaagggatttcttta
gcagaggttttagaaaaattcaatatagcattaagcaaaacaaaatttattgtagggcaa
aatgttgggttcgatgttaatattatgggagcagaattccatagagaagatgtcacaaat
gctttgcaggagcttcctgtattagatacatgtacagaaatcacggcaaacttatgtcag
attcctggtggccgtggtggtcggtttaaattgccaactttaacagaattacatcaattc
ttatttaatgtaccatttggtgaagcgcataatgccacagccgatgtagaggctacaaca
cgatgttttttcgaattaataagaagaaagcaatatacagttgaagctttagatgttgca
cccgattattttgagcgttttaataaagcgaatcctcaagaaattcagcttataggctta
aaacatattaacctaaagaaagcaagtgacaaaattagagagcgtttacaaaaaacgcaa
tctacagacttgtcggcagcagaaattaaacaaaatatttctgatttatccgaagttaat
tttgcgcatttacacaatcattctcaattttcagtcttacaatcaaccataagtatacct
aatttagttgcagcagcagctaaacaaaacatgattggtgtggcgcttaccgatcatgca
aatatgatgggggcatttcattttgttcgagcagttattaatcataataaaaatgttcaa
gctaaaaatgaagaggccgttgcagcgggtaaagcacctactttaaatgaaatgaaaccc
attttaggatgtgagttttttgtgtgtgaagatcacctagataaaagtagaaaagataat
ggctatcagattgttattatcgctaaaaataaaaacggctatcataatttagcaaaatta
tcgtctgcagcatttacagatgggttttattatgtgcctagaattgataaaaaattaata
caacaatacaaagaagacctaattgttttaacaggaaatttatatggtgaagtaccaagt
aaagttcttaatgttggagaaaatcaggcagaagaagccttaatttggtggaaagaacag
tttggtgatgatttgtatgtggaactaatgcgtcataatcaggaagatgaaaatcgtgtt
aaccctgtactgatcgagttagcaaagaagcataatgttaagctaattgcaaccaataat
acgtattatgtagataaaaaagatgccaatgcacacgatattttattatgtgtacgtgat
ggagaaaagcaatctacacctataggtcgtggtcgaggctatcgttatggtatgccaaat
caggagtattattttaaaacttcagacgaaatgaagtcgctgtttaaagatatacccgag
gctattattaatattcaagaggttgtaaataagattgaaatttttgaattagccagaaat
gtattattaccaaaatttgatatccctgaagagtttcagcatcctgaagatgaggtagat
ggaggaaaacgtggtgaaaatgcgtttttaagacatattacttataaaggcgctaaaatt
cgttatggtgaagaactttctccagaagttatagaacgtttagattttgagctttctgtt
atcgaaaaaactgggtatccaggatacttcttaattgtagaagactttattcgagctgca
cgacaaatggatgtgtctgtaggcccagggcgtggttctgcagcagggtctgtggttgca
tactgtttatggatcacaaatatagatcctatgttgtataacttactttttgagcgtttc
ttgaatccggatcgtgtaagtatgcccgatattgatattgattttgatgatgaaggtcga
agccgtgtaatggattatgtaatcgagaaatacggtagtaatcaggtagcacaaattatt
acctatggtaccatggctgccaaatcatctattcgtgatacggcgcgtgtattagatttg
ccgctttttgaagccgatagaatagcaaaattaattcctaacatgtctaagctaaataaa
atatttggtttagatgagaaagggttaaaagaaaaattcagagcagaagatcttgaaaaa
gttaatgaacttatcagtcttgccgatgggaaaaacctcgaagcagatactctaaattta
gcgcgacgcttagaagggtctgttagaaatactggaattcatgcttgtggtgttatcatt
acaccagacgatattaccaagtttgttcctgtatccttagccaaagattcagatttatat
gttacccagttcgataactcggtggtggaagatgcaggacttttaaagatggacttttta
gggttaaaaacattaactcttattaaagataccgttaaaattgtaaaggccaaacatgat
atagatctcgaccctgaaaactttcctttagatgatgtaaaaacatacgagctattccaa
cgcggagaaacaattggagtgtttcaatacgaatctcctggaatgcaaaaacacatgcag
tctttaaagcctacagtgtttgacgaccttattgctatgaatgccttgtatagaccaggg
ccaatggaatatattccgagttttattagaaggaaacacggagaagaagagattgaatac
gatttaccagcgatggaagagtatttaaaggaaacttacggaattacggtttatcaagag
caagtaatgctcttatcgcaaaagttggcagacttcacaaaaggtgaagcagatgtattg
cgtaaggctatgggtaaaaagcaaatagctgtattggataaaatgaagcctaaattcatt
aatcaagccagtgaaaaaggtcatgaccctaaaaagttagagaaaatttggaaagattgg
gaagcctttgcgagttatgctttcaataaatcgcactcaacatgttatgcgtggattgct
taccaaacagcatatttaaaagcgcattatcctgccgaatatatggcagcagtgttatct
aataacatgaacgatattaagcaggttacattttttatggaagaatgtaaacgtatgaag
ttagacgttttaggtccagatgttaatgaatcgttttataaattctctgtaaatgatgat
tatgctgttcgttttggaatgggagcagtaaaaggtgtagggcatggtgcggtaaaaaca
attgttgaaaacagaaaaaaagacggcccatataaatcaatttttgatttggccaaacgc
atagatcttcgcgcagcaaataagaaagcttttgagagtcttgcattggcaggaggtttt
gattgttttcaagatacacatcgggctcaatattttcaggatgaaggagacggtgttacc
tttctagaaaaagctataaaatatgggagcaagcaccaagagaatgaaaactctgctcaa
gtgagtttatttggtgaagctagtgatgtacaaatagaagaacctttagtgcctccagca
gaagattgggggactatggaaaaattagctagagaaaaagaagttatcggaatttatatc
tcaggacatcctttagatgattttaaaattgagatgaaaaatttctgtaatgctaattta
agtatgcttcgtaatttggaagcgtgtttaaatgcagaactcacttttggaggtgttatc
acagatgtgcaacaccgtgtgagtaagatgggaaaaggctgggcattgtttacgattatt
gattataatgatagttatgagtttagaatctttggtgaagattatctgaaatttagacac
ttttttgtggttaatagttttgtgcatgttaaggtatttgtaagagaaggttgggtaaat
aaagatacgggtaagaaaagtgaaccacgaattcagtttaacagctttcagttattacac
gacgttatggatcagtatgctaagaaattatcaattcagcttaatattgcaaatttgaca
gaaacgaaagtgtctaatttaaaaacgcttttcgataatcatgtaggaactaaattgttg
aattttttagtgtacgatcaagaagataaagttaaattacctatggtaagtagaactcaa
aaaataactatatctcaagaattattgcaagctttagatcgtgaagaggtgtattataag
ttaaattag
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