Formosa sediminum: FNB79_07450
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Entry
FNB79_07450 CDS
T06103
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fop
Formosa sediminum
Pathway
fop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FNB79_07450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fop03021
]
FNB79_07450
03400 DNA repair and recombination proteins [BR:
fop03400
]
FNB79_07450
Enzymes [BR:
fop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FNB79_07450
Transcription machinery [BR:
fop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FNB79_07450
DNA repair and recombination proteins [BR:
fop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FNB79_07450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF4249
H_lectin
Fungal_KA1
Motif
Other DBs
NCBI-ProteinID:
QDO93820
UniProt:
A0A516GR29
LinkDB
All DBs
Position
1701631..1702623
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AA seq
330 aa
AA seq
DB search
MAVFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSSLEGFAITSVRIE
GVEHEFSTIPGVVEDMTEIILNLKQVRFKRQIEDVDNESVSISISGQEQITAGDFQKFIS
GFQVLNSDLVICNLDPKVTVNIEITIEKGRGYVPAEENKKATAPIGTIFTDSIYTPIKNV
KYSIENYRVEQKTDYEKLIFEIQSDGSITPQDALTEAAKTLIHHFMLFSDERITLEADEI
AQTETYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFG
KKSLTELEELVNVKGLNFGMDLSKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcagtatttaattttcagaagcccgacaaagtaatcatgattgattccacagatttt
gaaggtaaattcgaatttagacctttagaacctggttatggattaacggttggaaatgct
ttaagaagagttttactttcttctttagaaggatttgcaattacatcagttagaattgaa
ggagtagagcatgaattctcaactatacctggtgttgttgaagacatgacagaaattatt
ttaaatttaaaacaagtacgttttaaaagacaaatagaagatgtagataacgaatctgtt
tctatatctatttctggtcaagaacaaataacagcaggagattttcaaaaatttatttca
ggttttcaggttttaaattcagatttagtaatttgtaatttagatcctaaggttactgtt
aatattgaaatcactattgaaaaaggtagaggttatgttcctgcagaagaaaataaaaaa
gctactgcgccaataggtactatctttacagattctatttatacaccaatcaaaaatgtt
aaatatagcattgagaattaccgtgtagaacaaaaaacagattacgaaaaattaattttc
gaaatccaatcagatggttctattacacctcaagatgctttaacagaagcagcaaaaaca
ttaattcaccactttatgttattctcagatgagcgtatcactttagaggctgatgaaatt
gctcaaactgaaacttacgatgaagaatcacttcatatgagacagttgcttaaaacaaaa
ttagtagatatggacctttcagttcgtgctctaaactgtttaaaagctgcagaagttgat
acattaggtgacttagtatcatttaataaaaatgacttaatgaagttccgtaactttggt
aagaaatctttaacagagcttgaagagcttgtaaacgttaaaggtttaaacttcggaatg
gatttatcaaaatacaaattagataaagattaa
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