Formosa sediminum: FNB79_10520
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Entry
FNB79_10520 CDS
T06103
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fop
Formosa sediminum
Pathway
fop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNB79_10520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fop03019
]
FNB79_10520
03009 Ribosome biogenesis [BR:
fop03009
]
FNB79_10520
Enzymes [BR:
fop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNB79_10520
Messenger RNA biogenesis [BR:
fop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNB79_10520
Ribosome biogenesis [BR:
fop03009
]
Prokaryotic type
rRNA helicases
FNB79_10520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDO94376
UniProt:
A0A516GS87
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All DBs
Position
complement(2429032..2430852)
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AA seq
606 aa
AA seq
DB search
MNTFKDLGLNDDLLRAITDMGFETPSEVQDKAIPLLLESEIDLVALAQTGTGKTAAFGFP
MLQKIDIDSRTTQGLILSPTRELCLQITNELKAYGKYCKGLNVVAIYGGSSIQDQARDVK
RGAQIIVATPGRMKDMINRKMVDISKIQYSVLDEADEMLNMGFYEDITDILSHTPIDKNT
WLFSATMPKEVSNIAKKFMDSPKEITVGNKNEGSTQVSHEYYLVNSRDRYQALKRLADAN
PDIFSVVFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYNHRSGRTGRAGKTGISMVIVSKSEVRKIKSIERI
IKKDFIKKEIPNGMEICEVQLMSLANKIHNTEVNPEIDKYLDSINTMFEDTSKEELIQKF
FSVEFTRFFNYYQKSKDLNVAEGNTREKEHVSNGNAARFFINVGSRDGFDWMKLKDFLKE
VLELGRDDVFKVDVKESFSFFNTEKELKDKVLAFFTDYKHDGRFVNVEETENKGGGGRGG
NRSRGGGGRRDRKDGGFRGERRSKSGGDRKRNSESKPRRSNSGFSSEKRSNSDQGSASSR
PRRSRR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaacacattcaaagatttaggtcttaatgacgacctattgcgtgctattaccgatatg
gggtttgaaactccaagtgaagtccaagacaaagccatcccattattattagaaagtgaa
atagatttagttgctttggcacaaacaggaacaggtaaaactgccgcgtttggttttcca
atgctacaaaaaatagatattgatagcagaaccactcaaggattaatcttatcgcctacg
cgcgaactttgtttacaaattactaacgaacttaaagcgtatggtaaatattgtaaaggt
ttaaacgttgttgctatatatggtggatctagtattcaggaccaagcaagagatgtgaaa
cgcggagctcaaattattgtagcaactccaggacgtatgaaagatatgattaaccgtaaa
atggttgatatttctaaaattcaatatagcgttctagatgaagcagatgaaatgctaaac
atgggattttatgaagatatcacagacatcttatctcacacacctatagacaaaaatact
tggttattttctgcaactatgcctaaagaggtttctaacattgcaaaaaaattcatggat
agtcctaaggaaatcactgtaggaaataaaaatgaaggaagtacgcaagtctctcacgaa
tactatttagtaaattctagagatcgttaccaagctttaaagcgtttagccgatgcaaat
cctgatatattttcagtagtattttgtcgtacaaagcgtgatacacaaaaagtagctgaa
caacttatagaagatggttacaatgcaggtgcacttcacggtgacttgagtcagaaccaa
cgtgatttagtaatgaaatcgtttagaaataatcaaatccaaatgttagttgctacagac
gtagctgctcgaggaattgatgtagacgatataacgcacgttattaattaccaattgcca
gacgaaattgaaacttataaccaccgtagtggtcgtacaggacgtgctggtaaaacaggt
atttctatggttattgtctctaaaagtgaggttagaaaaattaaaagtatagaacgtatt
ataaaaaaagatttcattaaaaaagaaattcctaacggaatggaaatttgtgaagttcaa
ttaatgtcgttagctaataaaattcacaatacagaagttaatccagaaattgataagtac
ttagacagtattaataccatgtttgaagatacgtctaaagaagaattaattcagaaattt
ttctcagtagaatttactcgtttctttaattactatcaaaaatctaaagatttaaacgta
gccgaaggaaatacaagagaaaaagaacatgttagtaatggaaatgctgcacgtttcttt
attaatgttggaagccgtgatggtttcgattggatgaaattaaaagatttcttaaaagaa
gttttagaattaggtcgcgacgatgtctttaaagtagatgttaaagaaagcttttcattc
tttaatacagaaaaagaacttaaagataaagtacttgcattttttacagattataaacac
gatggtcgttttgttaatgtagaagaaacagaaaacaaaggcggcggtggtcgtggtggc
aatagaagtcgtggtggcggaggccgtagagaccgtaaagatggtggctttagaggcgaa
agacgttctaaatctggaggtgatagaaaacgaaattcagagtctaaaccaagacgttct
aactctggatttagctctgaaaaacgaagcaattcagatcaaggttcagcgtcttctaga
ccaagacgatctagacgctaa
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