Formosa sediminum: FNB79_11005
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Entry
FNB79_11005 CDS
T06103
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fop
Formosa sediminum
Brite
KEGG Orthology (KO) [BR:
fop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fop03032
]
FNB79_11005
03400 DNA repair and recombination proteins [BR:
fop03400
]
FNB79_11005
Enzymes [BR:
fop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FNB79_11005
DNA replication proteins [BR:
fop03032
]
Prokaryotic type
DNA Topoisomerases
FNB79_11005
DNA repair and recombination proteins [BR:
fop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FNB79_11005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
HAT_KAT11
Motif
Other DBs
NCBI-ProteinID:
QDO94469
UniProt:
A0A516GSH3
LinkDB
All DBs
Position
2546828..2547811
Genome browser
AA seq
327 aa
AA seq
DB search
MYYRKKHGRGFRYVDASNKTIKDRHLKTWFKSLVIPPAWTSVEINANKKAKVLVTGRDEK
GRKQYIYNPKFRAKQNQDKFDRILKFANRLERMRRVTGQHLRKRKLCKDKVLACMVRLLE
AAYFRPGSDYYSKENQTYGLTTMRSKHLQISGDELIFSYTGKSGKSQERHIVDKKLAKIV
ADIDDLPGYEIFKFIDENGDKQDVKSEHLNAYIRMVMGDEFSAKDFRTWAGTVIAAIALD
EIGYSKAQDQKVLDKNIRDAVIKVSERLGNTPSVARSSYIDPRVIEEYVNGKTINYFQKE
ISRLLKSKENLSREELGVLCMLKTTLN
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgtattacagaaaaaaacatgggagaggctttcggtatgtagatgcttcaaataaaaca
ataaaagataggcacttaaaaacttggtttaagtctttagtgatcccaccggcctggact
tcggtagaaataaatgcgaataaaaaagccaaagtattagttaccggtcgcgatgaaaaa
ggcaggaaacaatatatttataatccgaagtttagagcaaaacagaatcaagacaaattt
gatagaattttaaaatttgcaaatagactagaacgtatgagacgggttactgggcaacat
ttacgcaaacgtaaattgtgcaaagacaaagttttagcctgtatggttagacttttggaa
gctgcatattttagaccaggaagtgattattacagcaaagaaaaccagacttatggtctg
actaccatgcgaagtaagcacttgcaaatatctggcgatgaactgatatttagttatact
ggtaaatctggaaaatcccaagaacgccatattgttgataagaaattagccaaaatagtt
gcagatatagatgatttaccgggctatgaaatttttaaatttattgatgaaaatggtgac
aaacaagatgtgaaaagtgagcatcttaatgcctatataagaatggtaatgggcgatgaa
ttttctgcaaaagattttagaacttgggccggaactgttattgcggctatagctttagat
gaaattggatattcaaaagcacaagatcagaaggtgcttgataaaaatatacgcgatgct
gttataaaagtgagtgagcgtttggggaatacaccttctgtggcgcgaagttcatatata
gatccgcgagttattgaagaatatgtaaatggtaaaacaataaattactttcaaaaagag
atttcaagacttctaaaatctaaagaaaatttatccagagaagaacttggtgttttatgt
atgctaaaaacaacattaaattaa
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