Formosa sp. Hel1_33_131: FORMB_02020
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Entry
FORMB_02020 CDS
T04465
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMB_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
for03019
]
FORMB_02020
03400 DNA repair and recombination proteins [BR:
for03400
]
FORMB_02020
Enzymes [BR:
for01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FORMB_02020
Messenger RNA biogenesis [BR:
for03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FORMB_02020
DNA repair and recombination proteins [BR:
for03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FORMB_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AOR27264
UniProt:
A0A1D7XVB5
LinkDB
All DBs
Position
complement(212260..214449)
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AA seq
729 aa
AA seq
DB search
MSISTKELHIALKTFFGFDKFKGLQEQVIVSLLEKKHTFAIMPTGGGKSLCYQLPALMQD
GTAIVVSPLIALMKNQVDAIRGISDYEGIAHVLNSSLNKTEIKQVKSDIESGITKLLYVA
PESLSKAENIEFLKAQTVSFMAVDEAHCISEWGHDFRPEYRNLKHIITQIGDNIPIIGLT
ATATPKVQEDILKNLGTTDSQTFKASFNRPNLFYEILPKTDQVDNDIIRFVKQNEGKSGI
IYCLSRKRVEGLSQILQVNGIKAVPYHAGLDAKTRSKHQDMFLMEDTDIVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQ
EIGFALLQEVVAMAETSMSRRKFILHYFGEAFDTETGDGGNMDDNVRNPKPQTEAIEEVQ
LMLEIVSHTHEKYKSKDLVNVIIGHDNALIKSHRTNELPFFGKGSNHDVLYWMALIRQAL
VAGYLRKDIETYGVLKLTPNGREFIEQPKSFMMTEDHTYNIESNRNYNNSLDLVDVALMR
MLKDLRKSNAKKLGVPPFVIFQDPSLEDMALKYPITIEELYHIHGVGEGKAKRYGKDFVK
LIKRYVDENDIERLEDMIIKSTGLNSSLKLYIIQNIDRKLPLDDISSAKGMNMADFIREL
EAIVFSGTKLNINYWIDEIFDEDQQDEIHDYFMESESDDIEAAIEEFDGEYDDQELRLYR
LKFISEVAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagtatttcgactaaagaattacatatagcacttaaaacctttttcgggtttgataaa
tttaaaggactgcaagaacaagtcattgttagtcttttagagaaaaaacacacctttgcc
attatgccaacaggaggagggaagtcactttgttatcaattacccgcgttgatgcaggat
gggacagccattgtcgtttctccattaatagcactcatgaaaaatcaagtggatgcgatt
cgaggtatttcggattatgaagggattgcacatgtattgaattcttccttaaataaaacc
gaaataaaacaagtgaaatcagatatagaatctggaatcacgaaacttttatacgtcgct
ccagagtcactttcaaaagctgagaatattgaatttttaaaagcgcaaacagtttcattt
atggcggtagatgaagcacactgcatcagtgaatggggacatgatttcagacctgaatac
agaaacttaaaacacatcattacacaaataggggataacattccaatcattggtttgaca
gcaacagcgacgcctaaggtgcaagaagatattcttaaaaatttagggacaacagactct
caaacgtttaaagcgtcttttaatagacctaacttattttacgagatacttcccaaaaca
gatcaggttgataatgacattatccgatttgtaaaacaaaacgaaggaaaatctggaatt
atctattgcctaagcagaaaacgcgttgaaggattgtcgcaaatccttcaagtgaacggg
atcaaagcagtgccatatcacgcaggcttggacgccaagacacgctccaaacatcaagac
atgtttttgatggaagacacggatatcgtggtggcaaccattgcgtttggaatgggcatc
gataaacccgatgtgcgttttgtgattcatcatgacattccaaaaagtattgaaagctat
taccaagaaacaggccgtgctggccgtgatggaggtgaaggacactgtttggcatattac
gcctataaagacatagaaaaacttgaaaaattcatgtcagggaaacctgttgccgaacaa
gaaattggctttgcgttgttgcaagaagtggtcgcaatggctgaaacgtccatgtcgcgt
cgtaaatttattttacattattttggagaagcatttgatacagaaacaggagatggtggc
aatatggatgataatgttcggaacccaaagccacagacggaagcgattgaggaagttcaa
ttaatgcttgaaattgtatcgcatacccacgaaaaatataaaagtaaagaccttgtcaat
gtcatcatagggcatgataatgcgcttataaaatcgcaccgtaccaacgaattgccattt
tttggtaaaggaagtaatcacgatgtgctttactggatggcactgatcagacaggcactc
gttgccggttacttacgcaaagacattgaaacctatggcgtcttaaaactcactcctaac
ggtcgtgaatttatagaacagccaaagtcgtttatgatgacggaagaccatacttacaac
atagaatcgaatcgtaattataacaattctttagatttagttgatgttgcactcatgcgg
atgcttaaagaccttcgtaaatccaatgctaaaaaactaggcgtccctccatttgtaatt
tttcaagatccatcgctcgaagatatggcgcttaaatatccaatcacaatagaagaactt
taccatattcatggggttggcgaaggaaaagctaagcgttatggcaaagattttgtaaag
ctcataaagcgttacgtcgatgaaaatgatattgaacgcttggaggatatgattatcaag
tccaccggattaaactcttccttgaaactttacatcattcaaaatattgatagaaaatta
cctcttgacgatatctcttccgcaaaaggaatgaatatggctgattttattagagaacta
gaagccattgtattttcgggtaccaaattaaacatcaattattggattgatgaaatattt
gatgaagaccaacaagatgaaattcatgactattttatggaatccgaatccgatgatata
gaagctgccattgaagaatttgatggggaatacgacgatcaagaattgcgtttgtatcgc
cttaaatttataagtgaagtggcaaattaa
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