Formosa sp. Hel1_33_131: FORMB_06400
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Entry
FORMB_06400 CDS
T04465
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMB_06400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
for03019
]
FORMB_06400
03016 Transfer RNA biogenesis [BR:
for03016
]
FORMB_06400
Enzymes [BR:
for01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FORMB_06400
Messenger RNA biogenesis [BR:
for03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FORMB_06400
Transfer RNA biogenesis [BR:
for03016
]
Prokaryotic type
tRNA degradation factors
FORMB_06400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AOR27693
LinkDB
All DBs
Position
699024..701219
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AA seq
731 aa
AA seq
DB search
MIPKVFKEVIDLGDGREISIETGKLAKQAHGSVVVQMGKAMLLCTVVSNYKQSDVNFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMS
HDEDVMPDALAGLAASAAIQLSDFPFECPISEVRVARVNGEFVINPSRAQLVDSDLEMMI
GASADSVMMVEGEMDEVSEEEMADAIKFAHEAIKIQVAAQVRLAEAFGKKEVREYDTAEV
NEDLEQRIHALAYDKCYAIAKKGTSKAERSTAFAEVKEDVKASFTEEENEEFGHLVSGYY
SKAEKEAVRELTLSEGVRLDGRQTDEIRPIWCEIDYLPSTHGSAIFTRGETQALATVTLG
TSRDSNKIDMPSYEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRGLKGMIPA
DCPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVKIARPVSGIAMGLISDGDRYAVLS
DILGDEDHLGDMDFKVTGTSEGITACQMDIKIKGLPYEILVNALKQARAGRLHILDKITE
TIATPAEDVKPHSPKMVTRVIPNEFIGALIGPGGKVIQELQKTTGTTIVINEDPVTEEGI
VEILGTDQDGIDAVLTKIDSLMFKPTVGESYQVKVIKMLDFGAVVEYMDAPGNEVLLHVS
ELAWERTENVSDVVNMGDIFDVKYFGQDPRTRKEKVSRKALLEKPEGYVARPPRDDKRSG
GRDNRGRDNRR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgataccaaaagtatttaaagaggtcattgacctcggcgatggaagagaaatctctatc
gaaacgggcaagctcgcaaagcaagcccacggatccgtagtcgtacaaatggggaaagcc
atgttgttatgtactgtggtctcaaactacaaacaatcggatgtcaactttttaccttta
acggtagattatcgcgaaaaatttgcagcagcaggtcgttatccaggtggattcttcaaa
agagaagcacgccctagtgatggagaagttttaacgatgcgtttagtggatcgtgtatta
cgtccattattccctaaagattaccacgcagaaacacaagtaatgattcagttgatgtct
catgacgaagatgtgatgcccgatgctcttgcaggtttagcggcatctgcagccattcaa
ttaagtgatttcccattcgaatgtccaatttctgaagtacgtgttgctcgtgtaaatggt
gaattcgtaatcaacccaagccgtgcacaattggtagattctgatcttgaaatgatgatc
ggtgcctctgcagattctgtgatgatggtagaaggtgaaatggatgaagtttctgaagaa
gaaatggcagacgctattaagtttgcacatgaagctattaagattcaagttgctgcgcaa
gtacgtcttgctgaagcatttggaaagaaagaagttcgtgaatatgatactgctgaagtc
aatgaagacttagagcaacgtattcatgctttagcgtatgacaaatgttatgcgattgct
aaaaaaggaacttcaaaagcagaacgtagcactgcatttgctgaagttaaagaagatgtg
aaagcttcttttactgaagaagaaaatgaagaatttggtcacttggttagcggatactac
agtaaagctgaaaaagaagccgtacgtgaattaacactgagtgaaggtgttcgtttggat
ggacgtcaaacagatgaaattagaccaatttggtgtgagatcgattacttaccttctaca
cacggttctgcaatcttcacacgtggagaaacgcaagcattagcaacagtaactcttgga
acttccagagattcaaacaaaattgatatgccttcttatgaaggtgaagagaatttttat
ttacactacaacttccctcctttctgtacgggtgaagcaagacctttaagaggaacttcg
cgtcgtgaagtaggacatggaaatcttgcacaaagaggcttaaaaggaatgatccctgcg
gattgtccttataccgttcgtgtggtttctgaagtattagaatcaaacggatcgtcttct
atggcaactgtttgtgcaggtacaatggcattgatggatgcaggggttaaaattgcaaga
ccagtatctggaatcgcgatgggattaatttctgacggcgaccgctatgctgtattatct
gatattttaggggatgaagatcacttaggagatatggattttaaagtgactggtacttcc
gaaggaattacagcctgtcaaatggatattaaaatcaaaggattgccttacgaaattctt
gtaaatgctttgaaacaagcacgtgcaggtcgtttacatattcttgataaaataacagaa
acaattgctactccagcggaagatgtgaaaccacactctccaaaaatggtaacaagagtg
attccaaatgaatttattggagcacttattggacctggtggaaaagtaatacaagaactt
caaaaaacaacaggaactaccattgtaatcaatgaagatcctgtaacagaagaaggaatt
gttgaaattcttggaacagatcaagatggtattgatgctgttttaacaaaaattgattcc
ttgatgttcaaaccaactgtaggagaatcgtaccaagttaaagtgattaaaatgcttgac
tttggagcggttgtagaatatatggatgcaccaggaaacgaagtgttacttcacgtaagt
gagttggcatgggaacgtactgaaaacgtatctgatgttgtgaatatgggtgatattttt
gatgtgaagtattttggacaagatccaagaacacgaaaagaaaaagtatcgcgtaaagct
ttgttagaaaaaccagaagggtatgttgcaagaccaccaagagatgataaacgttctggt
ggacgtgacaatcgcggacgtgataacagacgctaa
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