Formosa sp. Hel1_33_131: FORMB_10820
Help
Entry
FORMB_10820 CDS
T04465
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03410
Base excision repair
for03430
Mismatch repair
for03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FORMB_10820
03430 Mismatch repair
FORMB_10820
03440 Homologous recombination
FORMB_10820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
for03400
]
FORMB_10820
DNA repair and recombination proteins [BR:
for03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FORMB_10820
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FORMB_10820
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FORMB_10820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Lock_Gag1-like
Motif
Other DBs
NCBI-ProteinID:
AOR28129
LinkDB
All DBs
Position
complement(1163142..1164833)
Genome browser
AA seq
563 aa
AA seq
DB search
MRWTLKPKPDTKKIADLASKLGVDRAISELLLQRGIENFEDAKTFFRPSWSDLHDPFLMK
DMDKAVARIEAAIKSNEQVLVFGDYDVDGTSSVALMASYLETKSTQISTYIPDRYEEGYG
VSYKGIDFASDNDFSLIIALDCGVKAIEKVAYAKKKGIDFIICDHHRPGKELPDAVAILD
PKRPDCEYPFKELCGCGVGFKLIQALASKEGIPVESLVGYLDLVATAIGADIVPIVGENR
ALAYFGLQVINTNPRPGFKALINQMKKEVLTITDVVFNIAPRINAAGRMKHGNYAVALMK
EMSFENAETAASEIELFNTNRREADKRITQEALLQIEESNETEDATSVVYQEDWHKGVIG
IVASRLIETHYRPTLVFTKSGDFLAASARSVRGFDVYHALENCSHLLEQFGGHMYAAGMT
IKEENYSAFKAAFEAEVSATLPVHLRTPEIKIDAEIDFDAITPKFYRILKQFAPFGPQNM
SPVFMSSEVLDTGYGKCVGEDQTHLRVTLAQKGSSKIVGIGFGMGSDLPIVKSKTPFKVV
YSIDENEWNGRVSLQLKLKGIKS
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacgctcaaaccgaagcccgacaccaaaaaaatagccgatttagcctctaaa
ttaggcgtcgatagggcgatttcggagctgttactccaaagaggtattgagaattttgaa
gacgctaaaaccttttttcgaccgagttggtccgatttgcacgatccctttctgatgaaa
gacatggacaaagcagttgccagaatcgaagccgctataaaaagcaacgaacaggtatta
gtatttggagattatgatgtggacggcacttcttccgttgctttgatggcgtcctattta
gaaaccaaaagcactcagatttccacctatattcccgaccgttatgaagaagggtatggc
gtatcctacaaaggaattgacttcgcgtcagacaacgatttctcgttaataattgcctta
gactgcggagtcaaagcaattgaaaaagtggcctatgcaaagaaaaaaggcattgacttt
atcatctgtgaccatcaccgtccagggaaagaattgcccgatgcggtcgctattttagac
ccaaaacgtcccgattgtgaatacccttttaaagaactttgtggatgtggtgttggattt
aaattgattcaagccttggcatctaaagaggggattcctgtagaatctttggtagggtat
ttagatttagtagctacagcaattggtgccgatatagttcctattgttggcgaaaataga
gctctcgcttattttggcttgcaagtcattaataccaatccacgcccagggtttaaagcg
ctgatcaatcagatgaaaaaggaggtgctcaccatcactgatgttgtgtttaatattgca
ccgcgcatcaatgctgcaggacgtatgaaacatggcaactatgccgtggctctgatgaaa
gaaatgagttttgagaatgcagaaacagcagctagcgaaatagaactttttaataccaac
cgtcgcgaagcggacaagcgtatcacacaagaagccttgttacaaatagaagaatcaaac
gaaacggaagatgcgacttcggttgtatatcaagaagattggcacaaaggcgtgattgga
attgtagcctcccgattgatagaaacccattaccgccccactttggtatttaccaaaagt
ggcgactttttagcagcttccgcacgatctgtcagaggatttgatgtgtaccatgcctta
gaaaattgcagccatttattagagcaattcggagggcatatgtatgccgcaggaatgact
attaaagaagaaaattattcagcctttaaagccgcttttgaagctgaggtttcagcaacc
ttgcctgtacaccttcgaacgcctgaaataaaaattgatgccgaaattgattttgatgcc
atcacaccaaagttttatagaatcctaaaacaattcgctccctttggacctcaaaatatg
tcacccgtttttatgagttcagaagtactggatacaggctacggaaaatgtgtgggtgaa
gatcaaacgcatttacgggtcacactcgctcaaaaaggcagctccaaaattgtagggatt
ggctttggcatgggaagtgatttaccgattgttaaatctaaaactccctttaaggtggtc
tattctattgatgaaaacgaatggaatgggcgtgtgagtttacagttaaaattaaaaggc
attaaatcttaa
DBGET
integrated database retrieval system
