Formosa sp. Hel1_33_131: FORMB_18500
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Entry
FORMB_18500 CDS
T04465
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMB_18500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
for03021
]
FORMB_18500
03019 Messenger RNA biogenesis [BR:
for03019
]
FORMB_18500
Transcription machinery [BR:
for03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FORMB_18500
Messenger RNA biogenesis [BR:
for03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FORMB_18500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
Mor
Motif
Other DBs
NCBI-ProteinID:
AOR28881
LinkDB
All DBs
Position
complement(1946073..1947818)
Genome browser
AA seq
581 aa
AA seq
DB search
MFEISQLKEKKLPELQEIAKKLNVPKFKSLKKLDLVYQILDLQAANPTMVTPNVTPASAS
KTPRPRRERISKTTKDPNIKPTAPNTATAEKPEASPAVKAVPKKEVSENRPPKVKIETKA
AVRTEPSSEAKVESKVAPKINPRPQKQKNPNQNPNQNPNSKQNPNQNPNSKQNPNQNPNQ
KQNPNQNPNQKQGNNGNKDTRNRYKEPDFEFDAIIESEGVLDVMQDGYGFLRSSDYNYLA
SPDDIYVSQSQIRLFGLKNGDTVLGHVRPPKEGEKYFPLIRVSKINGLDPKAVRDRVAFE
HLTPLFPKQKFNIAEKQSTISTRIMDLFSPIGKGQRGMIVSQPKTGKTMLLKDVANGIAA
NHPEVYQMILLIDERPEEVTDMQRNVRGEVIASTFDKEAHEHVKIANIVLEKAKRLVECG
YDVVILLDSITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAARNIENGGSLTIIA
TALTETGSKMDEVIFEEFKGTGNMELQLDRKISNRRIFPAIDLTSSSTRRDDLLLDEKTI
KRMWVMRKYLADMNPVEAMEFINDRFKQTRNNEEFLISMNG
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcacaattaaaagaaaaaaaactccctgaattacaagaaattgccaaa
aagctcaacgttcctaaattcaaaagtttaaaaaaattagatctcgtatatcaaatacta
gacttgcaggctgccaacccaacaatggtgacaccaaatgtgaccccagcatcagcatca
aagacaccaagaccaagaagagaacgcatttctaaaaccactaaagatcctaatataaag
ccaacggctcctaacactgctactgcggaaaaaccagaagcaagtcctgctgtaaaagca
gtaccaaaaaaggaagtttctgaaaacagaccgccaaaggtgaaaattgaaaccaaagca
gcagtcagaacagaacctagttcagaagctaaagtggaatctaaggtcgcacctaaaatt
aacccaaggcctcaaaaacaaaaaaatccgaatcagaatccaaatcagaatccgaattcg
aaacagaatccaaatcaaaacccgaattcgaagcagaatccgaatcagaatccaaatcaa
aaacagaatccaaaccaaaacccgaatcaaaaacagggcaataacgggaataaagacact
cgaaaccgctataaagaacctgattttgaatttgacgccatcattgaaagtgaaggcgta
ttggatgtcatgcaagatggctatggcttcttaagatcttctgattataattatttagca
tctcctgacgatatttatgtgtctcaatctcaaatccgtttgttcggattgaaaaatgga
gataccgttttaggacatgtgcgtccaccaaaagaaggagaaaagtattttccacttatt
agagtgagtaaaattaatggactcgacccaaaagcggtgagagatcgtgtcgcatttgaa
cacttaacgcctctttttccaaagcaaaaatttaatattgctgaaaaacaaagtacaatt
tctactcgaattatggacttgttttctccaatcggaaaaggccaacgtgggatgattgta
tcacaaccaaaaacgggtaaaacaatgcttcttaaagatgttgccaacgggattgcggca
aaccatccagaagtgtatcaaatgattttattgattgacgaacgtcctgaagaagttact
gacatgcaacgtaatgtgcgtggcgaagtgattgcttctacgtttgacaaagaagcacat
gagcacgtaaaaattgcgaacatcgttttagaaaaagcaaaacgtcttgtagaatgtggt
tatgatgttgtgatactgttagattcgatcacacgtctggcacgtgcttacaacacggtt
cagccagcttctggaaagattttaagtggtggtgtggatgcgaatgcacttcacaaacca
aaacgtttcttcggagcggctcgaaatatagaaaatggagggtctttaacaattatcgca
acagcattgaccgaaacaggttctaagatggacgaggtgatctttgaagaattcaaagga
acaggaaacatggaacttcagttagatcgtaagatttcgaaccgtcgtattttccctgct
attgacctgacctcatcaagcacacgtagagacgacttgttgttagatgagaaaacaatc
aaacgtatgtgggtgatgcgaaagtaccttgcagatatgaaccctgtggaagcgatggag
tttatcaacgaccgtttcaaacaaacacgcaacaacgaggagtttttaatctcgatgaat
ggataa
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