Formosa sp. Hel1_33_131: FORMB_23220
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Entry
FORMB_23220 CDS
T04465
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FORMB_23220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
for03400
]
FORMB_23220
DNA repair and recombination proteins [BR:
for03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FORMB_23220
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FORMB_23220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
nSTAND3
AAA_23
DnaJ_CXXCXGXG
AAA_33
AAA_22
AAA_25
ATPase_2
AAA_14
AAA_24
NACHT
Viral_helicase1
cobW
Motif
Other DBs
NCBI-ProteinID:
AOR29340
UniProt:
A0A1D7Y1M8
LinkDB
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Position
complement(2399283..2402072)
Genome browser
AA seq
929 aa
AA seq
DB search
MPLDLSKLSPKEHILIKGAKLHNLKNIDVAIPRHKLVVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSSYARQFLGRLNKPNVDYIKGIAPAIAIEQKVNSTNPRSTVGTTTEIYDYLKL
VFARIGKTYSPTSNNVVKKDTTSDVINYIKTLEIGDKLLLLAPIHLEEGRTLENKLQALQ
HQGFARIKVSDTVERIEQIEDFKKLPKTISLVVDRIIVKGEEDFYNRLGDAIEMAFFEGK
GRCQIEKIETSESREFSNSFELDGQKFLEPNTHLFSFNNPYGACPKCEGYGDVIGIDESL
VIPNTSLSVYENAVFPWRGESMKYYRDQLVNNSHKFDFPIHKPYFELEAKHQKLLWKGNS
HFTGLNDFFAELESKAYKVQNRVMLSRYRGKTKCGSCHGKRLRPEANFVKVGGASITDLV
ELSLKDIIAFFKTIKLDAKEREIAKRLLKEINNRLEFLSNVGLDYLTLNRKSNTLSGGES
QRINLATSLGSSLVGSMYILDEPSIGLHSKDTERLINVLNALRDLGNTVIVVEHDEAIMA
AADYVIDIGPEAGTFGGEVMASGTYKSLLKSNTLTAQYLNGTLEIEVPKKRRTSKYSVTI
KGAREHNLKNIDVTLPLNMLTVVTGVSGSGKSTLVKQIVYPALLKSIGGYGEKAGEFTSI
EGNFSTVKFIEFVDQNPIGRSSRSNPVTYIKAYDDIRALFAKQKLSVLRNYQPKHFSFNV
DGGRCDTCKGEGAVTIEMQFMADVQLLCDDCDGKRFKKQVLEIKFHDKTIDDILNMTIDD
AVAFFEMHNVTKIKTKLQPLQDVGLGYVTLGQSSSTLSGGEAQRIKLASFLGKGSKADTG
LFIFDEPTTGLHFHDIKKLLKSFNALIDKGHSVLVVEHNLELIKCADHVIDLGPEGGANG
GYVLAEGTPEFITKSKKSSTADFLKSKLN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgccactagacctttcaaaactaagtccaaaagagcacattctaattaagggtgcaaaa
ttgcacaacctaaagaatatagacgttgcgattccacgacacaaattggtagtcatcaca
ggactttctggatcggggaaatcaagcttggcatttgacaccctctatgccgaaggccaa
cgacgttatgtggagagtttatcgagttatgcacggcagtttttggggcggctcaacaaa
ccaaatgtcgattatatcaaaggcattgcgccggcgattgcgattgaacagaaagtaaat
tctaccaatccgcgttccaccgttggaactaccaccgaaatttatgattatttaaaatta
gtattcgcgcgtatcgggaaaacctattcccctacttctaacaatgtagtgaaaaaagat
acaaccagcgatgtcattaattatatcaaaacgcttgaaataggcgataaactgctcctc
cttgctcccatccatctggaagaagggcgaacactagaaaataaactacaggctctgcaa
caccagggatttgcaagaatcaaagtgagtgataccgtagagcgtattgagcagattgaa
gattttaaaaaactaccaaaaacaatcagtttggttgtcgatcggattattgtgaaaggc
gaagaagatttttacaaccgtttgggagatgcgattgaaatggcattttttgaaggaaaa
ggacgttgtcaaattgaaaaaatagagacttcggagtcccgtgaatttagcaattcattt
gaactcgatggtcaaaaattcttagaacccaacacgcatttattcagctttaacaaccct
tatggcgcctgcccaaaatgtgaaggctatggagatgtcattggtattgatgaaagcctt
gtgattccaaatacctctctttcggtttatgaaaatgcggtgtttccatggcgtggggaa
agcatgaaatattacagggatcaactggttaataacagccataaatttgacttcccaatt
cacaagccttactttgaattagaagccaaacaccaaaaattgttatggaaagggaactct
cattttacaggtttaaacgacttttttgccgaattagaatccaaagcttataaagttcaa
aaccgagtgatgttatctcgctaccgcggaaaaacaaaatgtggaagttgccacggaaaa
cgcttacgaccagaagccaattttgtaaaagttggaggtgcctccattaccgatttggtg
gaattatcactcaaggatatcattgcattttttaagaccatcaagctagacgcaaaagaa
cgagaaattgcaaaacgattgctcaaagagattaataaccgcttggaatttttatccaat
gtggggctggattacctgactttaaaccgaaaatcaaacaccttatcggggggcgaaagc
caacggatcaatctggctacctcccttgggagcagtcttgtgggatctatgtatattttg
gacgaaccgagtattggactccattctaaagataccgaacgcctgatcaatgtactgaat
gccttgcgggatttaggaaacacagtgattgtggtggaacatgacgaagccatcatggca
gccgcagattacgtcattgatattggacccgaagcaggtacttttggtggcgaagtgatg
gcgagtggaacttacaaatcgcttttaaaaagtaatactttaacagctcagtacctcaat
gggactctggaaattgaagttcctaaaaaacgacggacgtcaaaatacagtgtaaccatc
aaaggcgctcgagaacataatttaaaaaatattgatgtgacccttccactaaacatgctc
acggttgtgacgggtgtttctggaagtggaaaaagtacgcttgtcaaacaaattgtgtat
cctgcactgctaaaatccattggaggctatggcgaaaaggcgggcgaattcacgagtatt
gaagggaactttagcaccgttaagtttatcgagtttgtcgatcaaaaccccatagggcgt
tcttcacgttccaaccctgtgacgtatatcaaagcctatgatgatattcgggcgctattc
gcgaagcaaaaattaagtgttttaagaaattaccaacccaaacatttttcattcaatgtc
gatggaggccgttgcgatacctgtaaaggcgaaggtgctgtcaccattgaaatgcagttt
atggctgacgtccaattgctttgtgacgactgtgatggaaaacgctttaagaaacaagtg
ttggaaattaagttccatgacaaaacaattgatgatattttaaacatgacgattgatgat
gccgttgccttttttgaaatgcataacgtgactaaaataaaaacaaaactacagccactt
caagatgtggggctggggtatgtgacccttggacaaagttcttcgaccctctctggtggt
gaagcacaacgtatcaaacttgcctcctttttaggaaaaggttccaaagcagacacgggt
ttgtttatttttgatgagcctacgacgggacttcattttcatgacattaaaaaactactc
aaatccttcaatgccttgattgacaaagggcactcggtattggtcgttgagcacaattta
gaactgattaaatgtgccgatcatgtgatcgatttaggtcctgaaggcggtgccaatggc
ggctatgtattggctgaaggcacgccagaatttataaccaaatcaaagaaatcttcaaca
gctgattttctaaaaagtaaattaaattga
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