Formosa sp. Hel1_33_131: FORMB_24460
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Entry
FORMB_24460 CDS
T04465
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMB_24460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
for03019
]
FORMB_24460
03400 DNA repair and recombination proteins [BR:
for03400
]
FORMB_24460
Enzymes [BR:
for01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FORMB_24460
Messenger RNA biogenesis [BR:
for03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FORMB_24460
DNA repair and recombination proteins [BR:
for03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FORMB_24460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
TrmB
DnaD_N
NirdL-like_HTH
HTH_36
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AOR29463
UniProt:
A0A1D7Y1L0
LinkDB
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Position
complement(2513241..2515139)
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AA seq
632 aa
AA seq
DB search
MKHPIEILEHYWKFSEFKPQQEAIIEAVLANEDCIALLPTGGGKSICFQIPALIKDGICI
VVSPLIALMQDQVNNLKEKGIKAMALTSGYTYDDIDRMLDNCIYGNYKFLYLSPERLQQD
LVQERIKQMNVNVIAVDEAHCISQWGHDFRPAYRDIKTLRTLHPSVNVIGLTASATAKVV
EDISTQLDCIAPQIFKTSFQRPNLAYLTLDCEDKYFKTVQILKKYAGTSIIYVRNRKATL
EISGYLNKIGITSGYYHGGLSPKEKDTQFERWTANENQVMVATNAFGMGIDKANVQTVIH
HNLPESLESYYQEAGRAGRNNENAYAVILRNTSDEKNSKSQYINGLPDIAFLKNVYKRLC
NYFQISYGEGVDTVHNFNFKLFCSTYSLPSILTYNALKILDRTSIISLEERFKNTAFLQI
IIGNTALFNYIEKHPKQALIIKVVLRSHEGVFDHSTEIFTQTIAKKINLSEDEVISHLTA
LNKAEIVQFESSKTDAQITFIEPREDDKTIHRISKIVSQQQDLKKAQLQSVFDYIKNDGI
CKSQKLLSYFEEIDSKQCGICSSCLERSKKSVISESDSKTILTLLKTDALSSRKLEALST
FNSEKLTTILTNLLEKELIELTERNTYKLKTS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatccaattgaaatattggaacactattggaaattttctgagtttaaaccacaa
caagaagcaattattgaagcggttttagcaaatgaagattgcatcgcacttttgccaaca
ggaggtgggaaatcgatttgttttcaaattccagccttgatcaaagacggcatttgtatt
gtggtttctccactcattgcattgatgcaagatcaagtaaataacctaaaagaaaaaggc
atcaaagcaatggcactcactagcggttatacttatgacgacatcgatcggatgttggat
aactgcatttatggaaattataaatttctctacctctctccggaacgtcttcaacaagat
ttagtgcaagaacgcatcaagcaaatgaatgtcaatgtcattgcggtggacgaggcgcat
tgcatcagtcagtggggacatgattttagaccggcctatcgagatatcaaaacgctcaga
acacttcatccctctgtaaacgtgattggattaactgcctcggcaactgccaaggtggta
gaggacattagcacacaattggactgcattgcaccacaaatttttaagacctcctttcaa
cgcccgaatttggcgtatttgaccttggactgtgaagataaatatttcaaaacggtacaa
attttaaaaaaatatgcgggtacctccatcatatatgtacgcaacagaaaagcaaccctt
gaaatttcagggtatttgaataagatcggaattacaagtggatactatcacggtggatta
agtccgaaggaaaaagacactcaatttgagcgttggacggcgaatgagaatcaagtgatg
gttgccaccaatgcctttggaatgggcattgacaaagccaacgtacaaactgtgattcat
cataacttacccgaaagcttggaaagctattatcaagaagctggacgtgcagggcgcaat
aatgaaaacgcctatgcagtcatccttcggaatacatccgatgaaaaaaactctaaaagt
caatatatcaatggcctgcctgatattgcgtttttaaaaaatgtatataaacgactttgt
aattattttcaaatttcttatggagaaggcgtggacacggttcataattttaactttaaa
ttattttgcagcacctatagccttccttctatcctgacgtataatgcgcttaaaatttta
gaccgaaccagtatcatatcattagaagaacggtttaaaaacacggccttcctacaaatc
attattggaaatactgctttgttcaactacatcgaaaagcatccaaaacaagccctgatc
ataaaagttgtcttaagaagtcacgaaggggtgtttgaccattctacagaaattttcacg
cagaccatcgcgaagaaaataaacctctcagaggacgaagtaatctcgcatttaactgct
ttgaataaggctgaaattgtgcagtttgaatcctcaaaaacagatgcacaaatcaccttt
attgaaccccgagaagatgataaaacaattcatagaatttctaagatcgtctcacaacaa
caggatttaaaaaaagcacaactgcaatcggtgtttgattatatcaaaaatgatggcatt
tgtaaaagtcaaaaattgctgtcttactttgaagaaatagactcaaaacaatgtgggatt
tgttcgagttgcttagaacgttcaaaaaaaagtgtaatttcagaaagtgattcaaaaaca
atcttaactttactcaaaacagacgccctctcttctagaaaactagaagctctaagcact
tttaatagcgaaaaattaaccactatactcaccaacctcttagaaaaagagttgattgaa
ctaacagaacgaaacacatacaaactgaaaacgtcatga
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