KEGG   Fusarium oxysporum: FOXG_00588
Entry
FOXG_00588        CDS       T04882                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
fox  Fusarium oxysporum
Pathway
fox03018  RNA degradation
fox03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fox00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOXG_00588
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FOXG_00588
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fox03019]
    FOXG_00588
   03041 Spliceosome [BR:fox03041]
    FOXG_00588
Messenger RNA biogenesis [BR:fox03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FOXG_00588
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     FOXG_00588
Spliceosome [BR:fox03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    FOXG_00588
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 28942891
NCBI-ProteinID: XP_018232701
UniProt: A0A0J9U981
LinkDB
Position
1:3470700..3472891
AA seq 99 aa
MATLGGYLNKKVLIVTADSRILVGTLAACDQTTNLVLNNAVERIIRTPDDLEPSAQVPLG
LYLVRGDNVCSIGLVDEALDDSINWTEVKGSAIGGIKHV
NT seq 300 nt   +upstreamnt  +downstreamnt
atggctacactcggtggatatctcaacaagaaagtcctgattgttacagccgattcgcgt
attcttgtcggaactctggcagcatgcgaccaaacaactaatctggtcttgaacaacgcc
gtggaacgaatcatccgaacgcccgacgatcttgagccttccgctcaggtacctttgggt
ctatacctcgtccgtggcgacaacgtatgctcgattggtctcgtagatgaggcgctcgac
gacagcatcaactggacagaagtcaagggttcagcaatcggcggtataaaacatgtatag

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