KEGG   Fusarium oxysporum: FOXG_03138
Entry
FOXG_03138        CDS       T04882                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
fox  Fusarium oxysporum
Pathway
fox03013  Nucleocytoplasmic transport
fox03015  mRNA surveillance pathway
fox03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fox00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOXG_03138
  09122 Translation
   03013 Nucleocytoplasmic transport
    FOXG_03138
   03015 mRNA surveillance pathway
    FOXG_03138
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fox03019]
    FOXG_03138
   03041 Spliceosome [BR:fox03041]
    FOXG_03138
Enzymes [BR:fox01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FOXG_03138
Messenger RNA biogenesis [BR:fox03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     FOXG_03138
Spliceosome [BR:fox03041]
 Complex C
  Other components
   EJC/TREX
    FOXG_03138
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    FOXG_03138
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 DUF4844
Other DBs
NCBI-GeneID: 28945279
NCBI-ProteinID: XP_018237037
UniProt: A0A0J9WIR5
LinkDB
Position
8:1498759..1501335
AA seq 434 aa
MSHEEDLIDYSDEEIGGNETTATTSNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE
LIRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKDTCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPPQKQVMMFSATLSE
EVKPICRKFMQNPTEHYVDEDTKLTLHGLQQFYIKLEEKEKNRKLNELLDELQFNQVIIF
VRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPE
FPKEGVDASTYMAS
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgtctcacgaggaagatctcattgattactccgatgaggagatcggtggtaacgaaacc
actgctaccacctccaacggcaagaagggcgagcttgctgccggcaacaatgtcgacaag
aagggcagctacgtcggcattcattccaccggtttccgcgattttcttttgaaggctgag
ttaattcgcgccatcggcgactgcggtttcgaacatccatcggaggttcaacaaacctgt
atcccccaggcactcctcggtggtgatatcatctgccaggccaagtctggtctaggaaag
acagctgtcttcgttctcgctacccttcagcaggtcgagcctgtgaacggagaggtctcc
gtcgttgttatgtgccacacccgagagctggcttaccagatccgtgacgagtacaaccgt
ttcagcaagtacatgcccgatatcaagaccggtgtgttctatggtggaactcccatcaag
accgacatggagacactcaagaataaggacacttgccctcacatcatcgtgggtactcct
ggacgtcttaaggccctcgttcgtgacaaggccctacgtctgggcagtgttcgcatcttc
gtgcttgatgagtgtgacaagatgcttgatcagcctgatatgcgtacggatgtgcaagat
gttttccgcgctacgcctcctcagaagcaggttatgatgttctcggccaccttgtccgag
gaggtaaaacctatttgccgaaagttcatgcagaacccgaccgagcactacgtcgacgag
gacactaagctcactcttcatggtcttcagcagttctatatcaagttggaagaaaaggag
aagaatcgcaagctcaacgagctcttggatgaactccagttcaaccaggtcattattttc
gtccgtagcactgttcgtgccactgagcttgacaagctcctcagggagtgtaactttcct
tctattgccgtccactctggcgtcagtcaggaagaacgtattcgtcgctacaaggagttc
aaggagttcaagaagagaatctgcgttgctaccgatgtctttggacgaggtattgatatt
gagcgtatcaacctcgccatcaactacgacttgtccaacgatgccagctcctacctgcac
cgtgtcggtcgtgctggacgattcggtaccaagggattggccatctcgttcgtcagcacc
gaccaagaccaagaggtgcttaaggagatcgagaagcgattcgaagtcgcccttcctgaa
ttccccaaggagggtgtcgatgccagcacttacatggcctcttaa

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