Fusarium oxysporum: FOXG_11049
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Entry
FOXG_11049 CDS
T04882
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fox
Fusarium oxysporum
Pathway
fox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOXG_11049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fox03019
]
FOXG_11049
03041 Spliceosome [BR:
fox03041
]
FOXG_11049
03009 Ribosome biogenesis [BR:
fox03009
]
FOXG_11049
03016 Transfer RNA biogenesis [BR:
fox03016
]
FOXG_11049
Enzymes [BR:
fox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOXG_11049
Messenger RNA biogenesis [BR:
fox03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
FOXG_11049
Spliceosome [BR:
fox03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
FOXG_11049
Complex C
U4/U6.U5 tri-SnRNP related factors
FOXG_11049
Ribosome biogenesis [BR:
fox03009
]
Eukaryotic type
Pre-60S particles
Helicases
FOXG_11049
Transfer RNA biogenesis [BR:
fox03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
FOXG_11049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Helicase_dom4_arc
nSTAND3
AAA_16
Glyco_hydro_65C
Motif
Other DBs
NCBI-GeneID:
28952477
NCBI-ProteinID:
XP_018249022
UniProt:
A0A0J9WQL2
LinkDB
All DBs
Position
1:complement(634291..637611)
Genome browser
AA seq
983 aa
AA seq
DB search
MGLDSSLVLSHNIQNQVALPPDLDYEYVPLSENKAPEQPARTWNFKLDPFQSLSVASIER
EESVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMT
GDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKIRGVVWEETIIML
PDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPSGGTGARLIVD
EKSNFNEQNFNKVMQEVEEKKGADPNDPNARQKGKGKNKKTNKGGADSGSDISKIIRMTI
KKKFNPVIVFNFSKRECENLAMNISSLSFNDDSEKAMVRKVFNSAIESLSEGDRELPQII
NLLPLLERGIGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVT
KWDGVKRRPLTSSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSA
FYLGYNMILNLLRIEAISPEFMLERCFHQFQNAASVPSLEKELMSLQQERDNTSIADEST
VKDYYQIRQQLSAYTKDMRTVIQHPNYSISYLQPGRLVQIYNPKDENETIAGTGTDFGWG
VIVNQTPRRAPKMGEPEYAPQESYVIDVLLPISRSSADFYPTQPVEDTPMPVGLKPFGDD
DDIKFAIVPCLLTCIKAISQIRLFLPKEGLKSESEKETLTKSLMEVKRRFPDGLPVLDPI
ENMEITDDSFKKLLRKIEVLESRLLANPLHLSPLLPALWDQYHTKVKLTEKVKETKKAIA
KAYSIAQMDELKSRKRVLRRLGFINDSEVVQLKARVACEISSTEGHELLLSELLFDRFFN
ELTPEMCAAVMSCFIFDEKIETTQLKEELSKPYREIQAKARIIAKVSQECKLEVNEEEYV
QKLKWQLMETVYAWAQGRPFIEICKMTKVYEGSLIRLFRRLEELLRQMGQAAKVMGNDDL
TKKFEDSLSKIRRDIVAAQSLYL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggggttggactcatcgcttgttttgtcgcacaacatccagaatcaggttgccctgcct
ccggatctagactacgaatacgttcccctctccgagaacaaggcccccgagcaacccgcg
cgaacatggaacttcaagctcgatcctttccagagtctttccgtggcgtctattgagaga
gaggagagtgttcttgtttccgcgcacacttctgcgggaaagactgttgtggctgagtat
gctgtcgcgcagtgtttgaagcgcaaccaaagagtcatctacacaagtcccatcaaggct
ctaagtaaccaaaagtaccgagatttcgaggccatctttggagatgttggtctcatgact
ggtgatgttactatcaaccccacagctagttgtctcgtcatgacgactgagattttgcga
tctatgttgtatcgcggttctgagattatgcgagaagtcgcttgggttgtctttgatgag
attcattacatgagagacaagataagaggtgttgtttgggaagagaccatcatcatgctt
cccgacaaggtccgatatgtcttcctctctgccaccattcccaacgctttccaattcgcc
gaatggattgccaagatccatcatcaagcttgtcacgttgtgtataccgatttccgacct
actcctctacagaactacttcttcccctcaggtggtactggcgctcgtctcatcgttgat
gagaagagcaacttcaatgagcagaatttcaacaaggtcatgcaagaggttgaggaaaag
aagggcgctgaccccaatgatcctaatgctcgtcagaaaggaaagggcaagaacaagaag
accaacaaaggtggcgctgacagtggctcggatatctccaagattattcgaatgactatc
aagaagaagttcaaccccgttattgttttcaactttagcaagcgagagtgtgagaacctg
gccatgaacatttcgtcgctcagcttcaacgacgattccgagaaggccatggttcgcaag
gttttcaacagtgctattgagagtttgtcagagggagatcgagagcttcctcagattatt
aacttgctacctctcttggagcgaggtattggtgtccatcactctggtcttctgcccatt
ctcaaggaaactattgagattctcttccaggagtctctcatcaaggttctcttcgcgact
gaaaccttctccattggtctcaacatgcccgccaagactgttgttttcacccaagtcacc
aagtgggatggtgtcaagagacgccctctcacttcatccgagtacattcagatggctgga
cgtgctggtcgtcgtggtcttgatgctcgaggtattgtcatcatgatgattgacgacaaa
ctcgagcctgataccgccaaggagattgtcaccggccatcaagatcgactcaactctgct
ttctacctcggttacaacatgattctcaacttgctacgtatcgaagctatctcacccgaa
ttcatgctcgagcgatgcttccatcaattccagaacgcggctagcgtcccctctttggag
aaggagttgatgtcattgcaacaggagcgcgacaacaccagcatcgccgacgagtccacg
gtcaaggactactaccagattcgacagcagctcagcgcctatactaaggatatgcgcact
gttatccagcaccccaactacagtatttcttacctgcagccaggtcgcttggtgcagatt
tacaaccccaaggacgagaacgagaccattgctggaaccggaaccgactttggctggggc
gtcatcgtcaaccagacccctcgccgcgcacccaagatgggcgaacccgaatatgcccct
caggaatcctatgttattgacgtgcttcttcccatctcccgatcaagcgcggatttctac
cccactcagcccgtcgaagatacccctatgcccgttggcctcaaacctttcggcgacgat
gacgacatcaagtttgcgatcgtcccttgccttctcacctgcatcaaggctattagtcaa
attaggcttttcctacccaaggaaggcctcaagtctgaatcagaaaaggagacgctcaca
aagtccctcatggaggtcaagcgccgcttccccgatggtctgcctgttctggaccccatc
gagaacatggaaatcaccgatgattcattcaagaagcttcttcgcaagatcgaagtcctt
gagtcccgacttctggccaaccctcttcacctctcaccccttcttcccgctctttgggac
cagtaccacaccaaggtcaagcttaccgagaaggtcaaggagaccaagaaggccatcgcc
aaagcgtacagcatcgcccagatggacgaactcaagtctcgcaagcgcgtgttgcgacgt
ctcggctttattaacgattccgaagtcgtccagcttaaggctcgcgttgcctgtgagatt
tcctccaccgaaggtcacgagctgcttctctccgaattgctctttgaccgcttcttcaat
gagctcactcctgagatgtgtgctgctgtcatgagttgctttatttttgacgaaaagatt
gaaacaacccagctcaaggaagaattgtcgaaaccttatcgtgagattcaggccaaggct
cgcattattgcaaaggtcagccaggaatgcaagcttgaggtcaacgaggaggaatatgtc
cagaagctcaagtggcagctgatggagacggtctacgcatgggcccaaggacgtcctttc
attgagatttgcaaaatgacaaaggtctacgaaggctctttgatccgtctcttccgtcgc
ctggaagagctacttcgccagatgggccaggccgccaaggtcatgggcaacgacgatcta
acgaagaagttcgaggacagtttatccaagattcgcagagatattgtggccgcgcagagc
ttgtacctataa
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